visualiseClusteredGenesets: Visulalise a set of clustered genesets on a circular...

In sansomlab/gsfisher: Geneset Fisher

Visulalise a set of clustered genesets on a circular dendrogram

Description

Visulalise a set of clustered genesets on a circular dendrogram

Usage

visualiseClusteredGenesets(
  results_table,
  geneset_clust = NULL,
  odds_ratio_max_quantile = 0.9,
  highlight = c(),
  id_col = "geneset_id",
  name_col = "description",
  ngenes_col = "n_fg",
  odds_ratio_col = "odds.ratio"
)

Arguments

results_table	A table of geneset results.
geneset_clust	A hclust object (e.g. from "clusterGenesetsByGenes").
odds_ratio_max_quantile	A quantile to cap the odds.ratio at for visulisation purposes.
highlight	A vector of descriptions to highlight in the plot
id_col	The column containing the unique geneset identifiers
name_col	The column containing the geneset name
ngenes_col	The column containing the number of geneset genes in the foreground
odds_ratio_col	The column containing the odds ratio for geneset enrichment

sansomlab/gsfisher documentation built on July 7, 2022, 4:21 a.m.