export2Tracer: Export trace in Tracer format

In sbfnk/fitR: Tool box for fitting dynamic infectious disease models to time series

Export trace in Tracer format

Description

Print trace in a file that can be read by the software Tracer.

Usage

export2Tracer(trace, file)

Arguments

trace	a data.frame with one column per estimated parameter, as returned by burnAndThin
file	either a character string naming a file or a connection open for writing. "" indicates output to the console.

Note

Tracer is a program for analysing the trace files generated by Bayesian MCMC runs. It can be downloaded at http://tree.bio.ed.ac.uk/software/tracer.

See Also

burnAndThin

sbfnk/fitR documentation built on July 18, 2023, 3:28 p.m.