API for sbfnk/fitR
Tool box for fitting dynamic infectious disease models to time series
| Global functions | |
|---|---|
| burnAndThin | Man page Source code |
| calibrateSmc | Man page |
| computeDic | Man page Source code |
| computeDistanceAbc | Man page Source code |
| dLogPosterior | Man page Source code |
| dLogPosteriorWrapper | Man page Source code |
| dTrajObs | Man page Source code |
| distanceOscillation | Man page Source code |
| epi1 | Man page |
| epi2 | Man page |
| epi3 | Man page |
| epi4 | Man page |
| export2Tracer | Man page Source code |
| fitmodel | Man page Source code |
| fluTdc1971 | Man page |
| margLogLikeSto | Man page Source code |
| mcmcEpi1 | Man page |
| mcmcEpi3 | Man page |
| mcmcEpi4 | Man page |
| mcmcMh | Man page Source code |
| mcmcSeit4l | Man page |
| mcmcSeit4lInfoPriorTheta1 | Man page |
| mcmcSeit4lInfoPriorTheta2 | Man page |
| mcmcSeit4lTheta1 | Man page |
| mcmcSeit4lTheta2 | Man page |
| mcmcSeitl | Man page |
| mcmcSeitlInfoPriorTheta1 | Man page |
| mcmcSeitlInfoPriorTheta2 | Man page |
| mcmcSeitlTheta1 | Man page |
| mcmcSeitlTheta2 | Man page |
| particleFilter | Man page Source code |
| plotEssBurn | Man page Source code |
| plotFit | Man page Source code |
| plotHPDregion2D | Man page Source code |
| plotPosteriorDensity | Man page Source code |
| plotPosteriorFit | Man page Source code |
| plotSMC | Man page Source code |
| plotTrace | Man page Source code |
| plotTraj | Man page Source code |
| pmcmcSeit4lInfoPrior128 | Man page |
| pmcmcSeit4lInfoPrior16 | Man page |
| printNamedVector | Man page Source code |
| rTrajObs | Man page Source code |
| seit2lDeter | Man page |
| seit2lStoch | Man page |
| seit4lDeter | Man page |
| seit4lStoch | Man page |
| seitlDeter | Man page |
| seitlDistanceOscillation | Man page Source code |
| seitlStoch | Man page |
| simulateFinalStateAtExtinction | Man page Source code |
| simulateModelReplicates | Man page Source code |
| simulateModelStochastic | Man page Source code |
| sir2popDeter | Man page |
| sirDeter | Man page |
| sirExpDeter | Man page |
| sirReportingDeter | Man page |
| sirStoch | Man page |
| testFitmodel | Man page Source code |
| updateCovmat | Man page Source code |
