Files in sbfnk/fitR
Tool box for fitting dynamic infectious disease models to time series.

.gitignore
DESCRIPTION
NAMESPACE
R/ABC.r R/fitR-package.r R/fitclasses.r R/logLikelihood.r R/mcmc.r R/plot.r R/smc.r R/utils.r README.md
_pkgdown.yml
data/FluTdC1971.rdata
data/SEIT2L_deter.rdata
data/SEIT2L_stoch.rdata
data/SEIT4L_deter.rdata
data/SEIT4L_stoch.rdata
data/SEITL_deter.rdata
data/SEITL_stoch.rdata
data/SIR.rdata
data/SIR_exp.rdata
data/SIR_reporting.rdata
data/SIR_stoch.rdata
data/calibrateSMC.rdata
data/epi.rdata
data/mcmc.rdata
data/mcmc_TdC_deter_longRun.rdata
data/mcmc_TdC_deter_shortRun.rdata
data/measles.rdata
data/pmcmc_SEIT2L_infoPrior_n400.rdata
data/pmcmc_SEIT2L_infoPrior_n50.rdata
data/pmcmc_SEIT4L_infoPrior_n400.rdata
data/pmcmc_SEIT4L_infoPrior_n50.rdata
docs/authors.html
docs/index.html
docs/jquery.sticky-kit.min.js
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/ABCLogPosterior.html
docs/reference/FluTdC1971.html
docs/reference/SEIT2L_deter.html
docs/reference/SEIT2L_pomp.html
docs/reference/SEIT2L_pomp_r.html
docs/reference/SEIT2L_stoch.html
docs/reference/SEIT4L_deter.html
docs/reference/SEIT4L_pomp.html
docs/reference/SEIT4L_pomp_r.html
docs/reference/SEIT4L_stoch.html
docs/reference/SEITL_deter.html
docs/reference/SEITL_distanceOscillation.html
docs/reference/SEITL_pomp.html
docs/reference/SEITL_pomp_r.html
docs/reference/SEITL_stoch.html
docs/reference/SIR.html
docs/reference/SIR_exp.html
docs/reference/SIR_reporting.html
docs/reference/SIR_stoch.html
docs/reference/burnAndThin.html
docs/reference/computeDIC.html
docs/reference/computeDistanceABC.html
docs/reference/dTrajObs.html
docs/reference/distanceOscillation.html
docs/reference/export2Tracer.html
docs/reference/fitR.html
docs/reference/fitmodel.html
docs/reference/index.html
docs/reference/logPosterior.html
docs/reference/logPosteriorWrapper.html
docs/reference/margLogLikeSto.html
docs/reference/mcmcMH.html
docs/reference/measles.html
docs/reference/particleFilter.html
docs/reference/plotESSBurn.html
docs/reference/plotFit.html
docs/reference/plotHPDregion2D.html
docs/reference/plotPosteriorDensity.html
docs/reference/plotPosteriorFit.html
docs/reference/plotSMC.html
docs/reference/plotTrace.html
docs/reference/plotTraj.html
docs/reference/printNamedVector.html
docs/reference/rTrajObs.html
docs/reference/simulateFinalStateAtExtinction.html
docs/reference/simulateModelReplicates.html
docs/reference/simulateModelStochastic.html
docs/reference/testFitmodel.html
docs/reference/updateCovmat.html
inst/examples/SEITL_deter.bi
inst/examples/SEITL_sto.bi
inst/examples/example-2pop.r inst/examples/example-SEI2R-pomp.r inst/examples/example-SEIR-decay.r inst/examples/example-SEIR-step-decay.r inst/examples/example-SEIT2L-deter.r inst/examples/example-SEIT2L-pomp-r.r inst/examples/example-SEIT2L-pomp.r inst/examples/example-SEIT2L-sto.r inst/examples/example-SEIT4L-deter.r inst/examples/example-SEIT4L-pomp-r.r inst/examples/example-SEIT4L-pomp.r inst/examples/example-SEIT4L-sto.r inst/examples/example-SEITL-deter.r inst/examples/example-SEITL-guess-values.r inst/examples/example-SEITL-libbi.r inst/examples/example-SEITL-pomp-r.r inst/examples/example-SEITL-pomp.r inst/examples/example-SEITL-sto.r inst/examples/example-fitmodel-log.r inst/examples/example-fitmodel-reporting.r inst/examples/example-fitmodel-stochastic.r inst/examples/example-fitmodel.r inst/examples/our_mcmcM.r inst/tests/test-classes.r inst/tests/test-logLike.r inst/tests/test-mcmc.r inst/tests/test-simu.r man/ABCLogPosterior.Rd man/FluTdC1971.Rd man/SEIT2L_deter.Rd man/SEIT2L_pomp.Rd man/SEIT2L_pomp_r.Rd man/SEIT2L_stoch.Rd man/SEIT4L_deter.Rd man/SEIT4L_pomp.Rd man/SEIT4L_pomp_r.Rd man/SEIT4L_stoch.Rd man/SEITL_deter.Rd man/SEITL_distanceOscillation.Rd man/SEITL_pomp.Rd man/SEITL_pomp_r.Rd man/SEITL_stoch.Rd man/SIR.Rd man/SIR_exp.Rd man/SIR_reporting.Rd man/SIR_stoch.Rd man/burnAndThin.Rd man/computeDIC.Rd man/computeDistanceABC.Rd man/dTrajObs.Rd man/distanceOscillation.Rd man/export2Tracer.Rd man/fitmodel.Rd man/logPosterior.Rd man/logPosteriorWrapper.Rd man/margLogLikeSto.Rd man/mcmcMH.Rd man/measles.Rd man/particleFilter.Rd man/plotESSBurn.Rd man/plotFit.Rd man/plotHPDregion2D.Rd man/plotPosteriorDensity.Rd man/plotPosteriorFit.Rd man/plotSMC.Rd man/plotTrace.Rd man/plotTraj.Rd man/printNamedVector.Rd man/rTrajObs.Rd man/simulateFinalStateAtExtinction.Rd man/simulateModelReplicates.Rd man/simulateModelStochastic.Rd man/testFitmodel.Rd man/updateCovmat.Rd
sbfnk/fitR documentation built on Aug. 12, 2017, 7:47 a.m.