Files in sbfnk/fitR

Tool box for fitting dynamic infectious disease models to time series

.Rbuildignore

.github/workflows/R-CMD-check.yaml

.github/workflows/lint_changed_files.yaml

.github/workflows/pkgdown.yaml

.github/workflows/render_readme.yml

.github/workflows/test-coverage.yaml

.gitignore

.lintr

DESCRIPTION

LICENSE

NAMESPACE

NEWS.md R/ABC.r R/fitR-package.r R/fitclasses.r R/logLikelihood.r R/mcmc.r R/plot.r R/smc.r R/utils.r README.Rmd README.md

_pkgdown.yml

data/calibrateSmc.rdata

data/epi.rdata

data/fluTdc1971.rdata

data/mcmcEpi.rdata

data/mcmcTdcDeterLongRun.rdata

data/mcmcTdcDeterShortRun.rdata

data/models.rdata

data/pmcmcSeit4lInfoPrior.rdata

docs/404.html

docs/authors.html

docs/bootstrap-toc.css

docs/bootstrap-toc.js

docs/docsearch.css

docs/docsearch.js

docs/index.html

docs/jquery.sticky-kit.min.js

docs/link.svg

docs/news/index.html

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/FluTdC1971.html

docs/reference/Rplot001.png

docs/reference/SEIT2L_deter.html

docs/reference/SEIT2L_stoch.html

docs/reference/SEIT4L_deter.html

docs/reference/SEIT4L_stoch.html

docs/reference/SEITL_deter.html

docs/reference/SEITL_distanceOscillation.html

docs/reference/SEITL_stoch.html

docs/reference/SIR_deter.html

docs/reference/SIR_exp_deter.html

docs/reference/SIR_reporting_deter.html

docs/reference/SIR_stoch.html

docs/reference/burnAndThin.html

docs/reference/computeDIC.html

docs/reference/computeDistanceABC.html

docs/reference/dLogPosterior.html

docs/reference/dLogPosteriorWrapper.html

docs/reference/dTrajObs.html

docs/reference/distanceOscillation.html

docs/reference/export2Tracer.html

docs/reference/fitmodel.html

docs/reference/index.html

docs/reference/margLogLikeSto.html

docs/reference/mcmcMH.html

docs/reference/particleFilter.html

docs/reference/plotESSBurn.html

docs/reference/plotFit.html

docs/reference/plotHPDregion2D.html

docs/reference/plotPosteriorDensity.html

docs/reference/plotPosteriorFit.html

docs/reference/plotSMC.html

docs/reference/plotTrace.html

docs/reference/plotTraj.html

docs/reference/printNamedVector.html

docs/reference/rTrajObs.html

docs/reference/simulateFinalStateAtExtinction.html

docs/reference/simulateModelReplicates.html

docs/reference/simulateModelStochastic.html

docs/reference/testFitmodel.html

docs/reference/updateCovmat.html

docs/sitemap.xml

inst/WORDLIST

man/burnAndThin.Rd man/calibrateSmc.Rd man/computeDic.Rd man/computeDistanceAbc.Rd man/dLogPosterior.Rd man/dLogPosteriorWrapper.Rd man/dTrajObs.Rd man/distanceOscillation.Rd man/epi1.Rd man/epi2.Rd man/epi3.Rd man/epi4.Rd man/export2Tracer.Rd man/fitmodel.Rd man/fluTdc1971.Rd man/margLogLikeSto.Rd man/mcmcEpi1.Rd man/mcmcEpi3.Rd man/mcmcEpi4.Rd man/mcmcMh.Rd man/mcmcSeit4l.Rd man/mcmcSeit4lInfoPriorTheta1.Rd man/mcmcSeit4lInfoPriorTheta2.Rd man/mcmcSeit4lTheta1.Rd man/mcmcSeit4lTheta2.Rd man/mcmcSeitl.Rd man/mcmcSeitlInfoPriorTheta1.Rd man/mcmcSeitlInfoPriorTheta2.Rd man/mcmcSeitlTheta1.Rd man/mcmcSeitlTheta2.Rd man/particleFilter.Rd man/plotEssBurn.Rd man/plotFit.Rd man/plotHPDregion2D.Rd man/plotPosteriorDensity.Rd man/plotPosteriorFit.Rd man/plotSMC.Rd man/plotTrace.Rd man/plotTraj.Rd man/pmcmcSeit4lInfoPrior128.Rd man/pmcmcSeit4lInfoPrior16.Rd man/printNamedVector.Rd man/rTrajObs.Rd man/seit2lDeter.Rd man/seit2lStoch.Rd man/seit4lDeter.Rd man/seit4lStoch.Rd man/seitlDeter.Rd man/seitlDistanceOscillation.Rd man/seitlStoch.Rd man/simulateFinalStateAtExtinction.Rd man/simulateModelReplicates.Rd man/simulateModelStochastic.Rd man/sir2popDeter.Rd man/sirDeter.Rd man/sirExpDeter.Rd man/sirReportingDeter.Rd man/sirStoch.Rd man/testFitmodel.Rd man/updateCovmat.Rd tests/spelling.R tests/testthat.R tests/testthat/test-classes.r tests/testthat/test-logLike.r tests/testthat/test-mcmc.r tests/testthat/test-simu.r

sbfnk/fitR documentation built on July 18, 2023, 3:28 p.m.