simulateFinalStateAtExtinction: Simulate model until extinction

In sbfnk/fitR: Tool box for fitting dynamic infectious disease models to time series

Simulate model until extinction

Description

Return final state at extinction

Usage

simulateFinalStateAtExtinction(
  fitmodel,
  theta,
  initState,
  extinct = NULL,
  timeInit = 0,
  timeStep = 100,
  n = 100,
  observation = FALSE
)

Arguments

fitmodel	a fitmodel object
theta	named numeric vector. Values of the parameters. Names should match fitmodel$thetaNames.
initState	named numeric vector. Initial values of the state variables. Names should match fitmodel$stateNames.
extinct	character vector. Simulations stop when all these state are extinct.
timeInit	numeric. Start time of simulation.
timeStep	numeric. Time step at which extinction is checked
n	number of replicated simulations.
observation	logical, if TRUE simulated observation are generated by rTrajObs.

sbfnk/fitR documentation built on July 18, 2023, 3:28 p.m.