sirExpDeter: A simple deterministic SIR model with constant population...

In sbfnk/fitR: Tool box for fitting dynamic infectious disease models to time series

A simple deterministic SIR model with constant population size and parameters on the exponential scale

Description

A simple deterministic SIR model with constant population size, uniform prior and Poisson observation. The parameters are transformed using an exponential transformation.

Format

A fitmodel object, that is a list with the following elements:

Details

• name character.

• stateNames character vector.

• thetaNames character vector.

• simulate R-function.

• rPointObs R-function.

• dprior R-function.

• dPointObs R-function.

Look at the documentation of fitmodel for more details about each of these elements. You can look at the code of the R-functions by typing sirExpDeter$simulate for instance. There are some comments included.

sbfnk/fitR documentation built on July 18, 2023, 3:28 p.m.