export_html: Export the workflow plot as HTML

In sbg/tidycwl: Tidy Common Workflow Language Tools and Workflows

Export the workflow plot as HTML

Description

Export the workflow plot as HTML

Usage

export_html(g, file, ...)

Arguments

g	Plot rendered by visualize_graph.
file	File to save HTML into.
...	Additional parameters for visSave.

Value

HTML file path

Examples

file_html <- tempfile(fileext = ".html")
flow <- system.file("cwl/sbg/workflow/gatk4-wgs.json", package = "tidycwl") %>% read_cwl_json()
if (rmarkdown::pandoc_available("1.12.3")) {
  get_graph(
    flow %>% parse_inputs(),
    flow %>% parse_outputs(),
    flow %>% parse_steps()
  ) %>%
    visualize_graph() %>%
    export_html(file_html)
}

sbg/tidycwl documentation built on April 2, 2022, 3:29 a.m.