parse_outputs: Parse the outputs of the CWL workflow into a data frame

In sbg/tidycwl: Tidy Common Workflow Language Tools and Workflows

Parse the outputs of the CWL workflow into a data frame

Description

Parse the outputs of the CWL workflow into a data frame

Usage

parse_outputs(x, simplify = TRUE)

Arguments

x	CWL object
simplify	Simplify the list as a data frame?

Value

List or data frame of outputs

Examples

system.file("cwl/sbg/workflow/rnaseq-salmon.json", package = "tidycwl") %>%
  read_cwl_json() %>%
  parse_outputs() %>%
  names()

system.file("cwl/sbg/workflow/rnaseq-salmon.cwl", package = "tidycwl") %>%
  read_cwl_yaml() %>%
  parse_outputs() %>%
  names()

sbg/tidycwl documentation built on April 2, 2022, 3:29 a.m.