get_graph: Get the CWL workflow graph

In sbg/tidycwl: Tidy Common Workflow Language Tools and Workflows

Get the CWL workflow graph

Description

Get the CWL workflow graph as a list of two data frames: a data frame of nodes and a data frame of edges.

Usage

get_graph(inputs, outputs, steps)

Arguments

inputs	Parsed inputs
outputs	Parsed outputs
steps	Parsed steps

Value

List of two data frames containing node and edge information

Examples

# sbg:draft2
flow <- system.file("cwl/sbg/workflow/gatk4-wgs.json", package = "tidycwl") %>% read_cwl_json()
get_graph(
  flow %>% parse_inputs(),
  flow %>% parse_outputs(),
  flow %>% parse_steps()
) %>% str()

# v1.0
flow <- system.file("cwl/sbg/workflow/rnaseq-salmon.json", package = "tidycwl") %>% read_cwl_json()
get_graph(
  flow %>% parse_inputs(),
  flow %>% parse_outputs(),
  flow %>% parse_steps()
) %>% str()

sbg/tidycwl documentation built on April 2, 2022, 3:29 a.m.