get_nodes: Get nodes in a CWL workflow into a data frame

In sbg/tidycwl: Tidy Common Workflow Language Tools and Workflows

Get nodes in a CWL workflow into a data frame

Description

Get nodes in a CWL workflow into a data frame

Usage

get_nodes(inputs, outputs, steps)

Arguments

inputs	Parsed inputs
outputs	Parsed outputs
steps	Parsed steps

Value

Data frame containing node information

Examples

flow <- system.file("cwl/sbg/workflow/gatk4-wgs.json", package = "tidycwl") %>% read_cwl_json()
get_nodes(
  flow %>% parse_inputs(),
  flow %>% parse_outputs(),
  flow %>% parse_steps()
) %>% str()

sbg/tidycwl documentation built on June 5, 2024, 3:29 p.m.