visualize_graph: Visualize the CWL workflow

In sbg/tidycwl: Tidy Common Workflow Language Tools and Workflows

Visualize the CWL workflow

Description

Visualize the CWL workflow

Usage

visualize_graph(
  g,
  hierarchical = TRUE,
  direction = "LR",
  separation = 300,
  palette = c("#C3C3C3", "#FF8F00", "#00AAA8"),
  width = "100%",
  height = 600
)

Arguments

g	Graph generated by get_graph.
hierarchical	Enable the hierarchical layout? Default is TRUE.
direction	Direction of the hierarchical layout. Options include "LR", "RL", "UD", and "DU" (up-down, down-up, left-right, right-left). Default is "LR".
separation	Level separation parameter from visHierarchicalLayout.
palette	Three-color palette for inputs, outputs, and steps.
width	Canvas width, see visNetwork. Default is "100%".
height	Canvas height, see visNetwork. Default is 600.

Value

A visNetwork output.

Examples

flow <- system.file("cwl/sbg/workflow/gatk4-wgs.json", package = "tidycwl") %>% read_cwl_json()
get_graph(
  flow %>% parse_inputs(),
  flow %>% parse_outputs(),
  flow %>% parse_steps()
) %>% visualize_graph()

sbg/tidycwl documentation built on June 5, 2024, 3:29 p.m.