API for sboehringer/gwasWeighted
Weighted Bonferroni Correction in GWASs
| Global functions | |
|---|---|
| .List | Source code |
| .df | Source code |
| .df.reorder | Source code |
| .dfm | Source code |
| .dfns | Source code |
| .dfrm | Source code |
| .dfrmr | Source code |
| .do.call | Source code |
| .fn | Source code |
| .fn.popPrefix | Source code |
| .fn.pushPrefix | Source code |
| .fn.set | Source code |
| .list | Source code |
| A2M | Source code |
| A2V | Source code |
| A2VbyRow | Source code |
| As.list | Source code |
| Attr | Source code |
| Avu | Source code |
| Benchmark | Source code |
| CallDelegate | Source code |
| Capture.output | Source code |
| Cbind | Source code |
| Col.names | Source code |
| Con | Source code |
| Deparse | Man page Source code |
| Df | Source code |
| Df2list | Source code |
| DfApplyValueMap | Source code |
| DfAsCharacter | Source code |
| DfAsInteger | Source code |
| DfAsLogical | Source code |
| DfClasses | Source code |
| DfCol | Source code |
| DfDiff | Source code |
| DfFac2num | Source code |
| DfNames2std | Source code |
| DfRepl | Source code |
| DfRound | Source code |
| DfSearch | Source code |
| DfSelectCols | Source code |
| DfStack | Source code |
| DfUniqueByCols | Man page |
| DfUniqueRowsByCols | Source code |
| Df_ | Source code |
| Dfselect | Source code |
| Dimnames | Source code |
| Dir.create | Source code |
| Do.call | Source code |
| Do.callIm | Source code |
| Eval | Source code |
| FetchRegexpr | Source code |
| File.copy | Source code |
| File.copy_raw | Source code |
| File.exists | Source code |
| File.remove | Source code |
| File.symlink | Source code |
| FirstDef | Source code |
| Formula.to.character | Source code |
| GWASweighted | Source code |
| GWASweights | Source code |
| Identity | Source code |
| Identity1 | Source code |
| Inlist | Source code |
| Install_local | Source code |
| Intersect | Source code |
| IterateModelsExpand | Source code |
| Kronecker | Source code |
| List | Source code |
| List.takenFrom | Source code |
| ListOfLists2df | Source code |
| ListOfLists2df_extract | Source code |
| Load | Source code |
| Log | Man page Source code |
| Log.expr | Source code |
| Log.level | Man page Source code |
| Log.setLevel | Man page Source code |
| LogS | Source code |
| Logs | Source code |
| Lundrop2col | Source code |
| Lundrop2row | Source code |
| MC | Source code |
| MR | Source code |
| MatchRegex | Source code |
| MatchRegexExtract | Source code |
| Merge | Source code |
| Merge.lists | Source code |
| Merge.lists.raw | Source code |
| Nif | Source code |
| Nina | Source code |
| NormalizePath | Source code |
| Optim | Source code |
| Optimize | Source code |
| OptimizeMultiStart | Source code |
| Order | Man page Source code |
| Parse | Source code |
| Source code | |
| Rank | Man page |
| Rbind | Source code |
| RbindDfs | Source code |
| Recycle | Source code |
| Regexpr | Source code |
| RegexprM | Source code |
| RegexprSingle | Source code |
| Rep.each | Source code |
| Reshape.levelMap | Source code |
| Reshape.levelMap_list | Source code |
| Reshape.levelMap_re | Source code |
| Reshape.long | Source code |
| Reshape.long.byParts | Source code |
| Reshape.long.raw | Source code |
| Row.names | Source code |
| Save | Source code |
| Seq | Man page Source code |
| SeqRows | Source code |
| SetNames | Source code |
| Simplify | Source code |
| SourceLocal | Source code |
| SplitPath | Source code |
| Sprintfl | Man page Source code |
| Stop | Source code |
| Substr | Man page Source code |
| Sumlog | Source code |
| System | Source code |
| System.SetDoLogOnly | Source code |
| System.wait | Source code |
| SystemS | Source code |
| Table | Source code |
| Trimws | Source code |
| Union | Source code |
| Unlist | Source code |
| V2A | Source code |
| Vector.assign | Source code |
| Which.max | Source code |
| Which.min | Source code |
| abbr | Source code |
| absolutePath | Source code |
| absolutePathSingle | Source code |
| accessIdx | Source code |
| adic2ord | Source code |
| analyzeDataAll | Source code |
| analyzeDataMeta | Source code |
| analyzeDataWB | Source code |
| applyCached | Source code |
| applyL | Source code |
| applyPermutation | Source code |
| array.extract | Source code |
| arrayFromRowPairs | Source code |
| asc | Source code |
| assign.list | Source code |
| avu | Source code |
| base2dec | Source code |
| be.numeric | Source code |
| benchmark.timed | Source code |
| bin.to.dec | Source code |
| bound_fcts | Source code |
| bound_vars | Source code |
| cList | Source code |
| callDelegate | Source code |
| callEvalArgs | Source code |
| callWithArgs | Source code |
| callWithFunctionArgs | Source code |
| cbindDataFrames | Source code |
| character.as.characters | Source code |
| characterRange | Source code |
| circumfix | Source code |
| clearWarnings | Source code |
| coefficientNamesForData | Source code |
| col.frame | Source code |
| combinerCorr | Source code |
| compressPath | Source code |
| compressPathBz2 | Source code |
| compressedConnection | Source code |
| compressedConnectionBz2 | Source code |
| compressedConnectionGz | Source code |
| compressedConnectionPath | Source code |
| con | Source code |
| copyFactorStructure | Source code |
| count | Source code |
| count2blocks | Man page Source code |
| counts2idcs | Source code |
| countsExtract | Source code |
| covariatePairs | Source code |
| createZip | Source code |
| cumpartition | Source code |
| cumprod1 | Source code |
| cumsumI | Source code |
| cumsumR | Source code |
| data.frame.expandWeigths | Source code |
| data.frame.types | Source code |
| data.frame.union | Source code |
| data.vars | Source code |
| data.vars.after | Source code |
| dataColRange | Source code |
| dataExpandFactors | Source code |
| dataExpandedNames | Source code |
| dataSelectCols | Source code |
| dataSelectVars | Source code |
| debugOn | Source code |
| dec.to.bin | Source code |
| dec2base | Source code |
| decompressPath | Source code |
| decompressPathBz2 | Source code |
| deduplicateLabels | Source code |
| defined | Source code |
| defined.by.name | Source code |
| dfNmsStd | Source code |
| dfapply | Source code |
| dirList | Source code |
| dprint | Source code |
| eilapply | Source code |
| einXapply | Source code |
| einlapply | Source code |
| einsapply | Source code |
| eisapply | Source code |
| encapsulateCall | Source code |
| ensapply | Source code |
| environment.copy | Source code |
| environment.restrict | Source code |
| environment_eval | Source code |
| environment_evaled | Source code |
| eval.text | Source code |
| evalCall | Source code |
| evaluateArgs | Source code |
| exists.pos | Source code |
| expand.block | Source code |
| expandBlocks | Source code |
| exprInDir | Source code |
| extractWindow | Source code |
| factor2int | Source code |
| factor2numeric | Source code |
| factorWithLevels | Source code |
| fetchRegexpr | Source code |
| file.locate | Man page Source code |
| fileName | Source code |
| filterList | Source code |
| findLastVersion | Source code |
| findNextFile | Source code |
| firstDef | Source code |
| firstDefNA | Source code |
| firstUpper | Source code |
| formula.add.response | Source code |
| formula.add.responseByName | Source code |
| formula.add.rhs | Source code |
| formula.covariates | Source code |
| formula.expand | Source code |
| formula.nullModel | Source code |
| formula.predictors | Source code |
| formula.re | Source code |
| formula.response | Source code |
| formula.rhs | Source code |
| formula.set.rhs | Source code |
| formula.to.character | Source code |
| formula.vars | Source code |
| formula2filename | Source code |
| formulaRemoveTransformation | Source code |
| formulaWith | Source code |
| formulas.free | Source code |
| fraction | Source code |
| gapply | Source code |
| genomicRotation | Source code |
| genomicRotationIdcs | Source code |
| genomicRotationPerc | Source code |
| genomicRotationsPerc | Source code |
| genomicRotationsPercs | Source code |
| getCommandOptions | Source code |
| getElement | Source code |
| getPatternFromFiles | Source code |
| getPatternFromStrings | Source code |
| getRandomSeed | Source code |
| grep.infixes | Source code |
| grep.vector | Source code |
| gridBounding | Source code |
| gridFactor | Source code |
| gsubI | Source code |
| gsubR | Source code |
| handleTriggers | Source code |
| hex2int | Source code |
| hex2ints | Source code |
| idcsStart2range | Source code |
| ilapply | Source code |
| index2listPosition | Source code |
| inlist | Source code |
| instantiate | Source code |
| instantiate.list | Source code |
| intersectSetsCount | Source code |
| inverse | Source code |
| inverseOrder_fromOrder | Man page Source code |
| inversePermutation | Source code |
| is.ascending | Source code |
| is.in | Source code |
| is.seq | Source code |
| is.sorted | Source code |
| isURL | Source code |
| iterateModels | Source code |
| iterateModelsDefaultSymbolizer | Source code |
| iterateModelsExpand | Source code |
| iterateModelsJoinSymbolizer | Source code |
| iterateModelsSymbolizer | Source code |
| iterateModels_prepare | Source code |
| iterateModels_raw | Man page Source code |
| join | Source code |
| kernelStandard | Source code |
| keyPathAst | Source code |
| keyPathAstRaw | Source code |
| keyPathExpression2key | Source code |
| keyPathParse | Source code |
| kvlapply | Source code |
| lapplyCols | Source code |
| lapplyDir | Source code |
| lapplyRows | Source code |
| lapplyWoI | Source code |
| last | Source code |
| list.combine | Source code |
| list.copy | Source code |
| list.embed | Source code |
| list.extract | Source code |
| list.extractRows | Source code |
| list.key | Source code |
| list.keys | Source code |
| list.kp | Source code |
| list.kp.keys | Source code |
| list.kp.unquote | Source code |
| list.kpr | Source code |
| list.kprw | Source code |
| list.kprwPar | Source code |
| list.kprwkp | Source code |
| list.kpu | Source code |
| list.min | Source code |
| list.takenFrom | Source code |
| list.to.df | Source code |
| list.transpose | Source code |
| list.with.names | Source code |
| list2df | Source code |
| list2df.print | Source code |
| listFind | Source code |
| listInverse | Source code |
| listKeyValue | Source code |
| listNamed | Source code |
| listOfDataFrames2data.frame | Source code |
| listOfLists2data.frame | Source code |
| listOfLists2df | Source code |
| listReverseHierarchy | Source code |
| list_files_with_base | Source code |
| list_files_with_exts | Source code |
| lists.splice | Source code |
| lrbind | Source code |
| mat.sel | Source code |
| matchRegex | Source code |
| matchRegexCapture | Source code |
| matchRegexExtract | Source code |
| matrix.assign | Source code |
| matrix.intercalate | Source code |
| matrix.same | Source code |
| matrixCenter | Source code |
| matrixDeCenter | Source code |
| matrixFromIndexedDf | Source code |
| matrixSearch | Source code |
| md5sumString | Source code |
| meanList | Source code |
| meanMatrices | Source code |
| meanStructure | Source code |
| meanVectors | Source code |
| merge.lists | Source code |
| merge.lists.recursive | Source code |
| merge.lists.takenFrom | Source code |
| merge.lists.takenFrom_old | Source code |
| merge.multi | Source code |
| merge.multi.dfs | Source code |
| merge.multi.list | Source code |
| merge.multi.list.symbolic | Source code |
| merge.multi.symbolizer | Source code |
| mergeDictToDict | Source code |
| mergeDictToString | Source code |
| mergeDictToVector | Source code |
| meshVectors | Source code |
| minFloor | Source code |
| minimax | Source code |
| minus | Source code |
| modifyRegion | Source code |
| nelapply | Source code |
| nif | Source code |
| nina | Source code |
| nit | Source code |
| niz | Source code |
| nlapply | Source code |
| normMinLog | Source code |
| normPower | Source code |
| normalizePath | Source code |
| notE | Source code |
| null2na | Source code |
| nullomit | Source code |
| object.copy | Source code |
| ord2adic | Source code |
| order.df | Source code |
| order.df.maps | Source code |
| order_align | Man page Source code |
| order_align_fromOrder | Man page Source code |
| pad | Source code |
| pairsapplyLV | Source code |
| pairsapplyVL | Source code |
| pairslapply | Source code |
| pastem | Source code |
| pathInsertPostfix | Source code |
| pathSimplify | Source code |
| pathToHome | Source code |
| plus | Source code |
| pop | Source code |
| qs | Source code |
| qsPath | Source code |
| qsSingle | Source code |
| qsSinglePath | Source code |
| qss | Source code |
| qssSingle | Source code |
| quoteString | Source code |
| qw | Source code |
| qwi | Source code |
| qwn | Source code |
| r.output.to.vector.int | Source code |
| r.output.to.vector.numeric | Source code |
| rangeBlock | Source code |
| rbind.list2df | Source code |
| rbindDataFrames | Source code |
| readFile | Man page Source code Source code |
| recodeLevels | Source code |
| recycle | Source code |
| recycleTo | Source code |
| reduceData | Source code |
| reduceDataSingle | Source code |
| regexIdcs | Source code |
| relativePathSingle | Source code |
| rep.each | Source code |
| rep.each.row | Source code |
| rep.each.vector | Source code |
| rep.list | Source code |
| reshape.long | Man page Source code |
| reshape.wide | Source code |
| rget | Source code |
| runGWASweighted | Source code |
| runSimulationAltSingle | Source code |
| runSimulationNull | Source code |
| runSimulationSingle | Source code |
| same.vector | Source code |
| sapplyId | Source code |
| sapplyWoI | Source code |
| sapplyn | Source code |
| search.block | Source code |
| searchContour | Source code |
| searchContourGrid | Source code |
| searchContourGridList | Source code |
| searchContourGridRaw | Source code |
| searchDataFrame | Source code |
| searchOptimum | Source code |
| searchOptimumGrid | Source code |
| selectTopChrs | Source code |
| set.card | Source code |
| sha256sumPath | Source code |
| sha256sumString | Source code |
| shift | Source code |
| silence | Source code |
| simulateAltTopHits | Source code |
| simulateModelsWBAlt | Source code |
| simulateModelsWBAltScenario | Source code |
| simulateModelsWBAltScenarioSingle | Source code |
| simulateModelsWBNull | Source code |
| simulateModelsWBNullScenario | Source code |
| simulateModelsWBNullScenarioSingle | Source code |
| simulateNull | Source code |
| size | Source code |
| splitBy | Source code |
| splitListEls | Source code |
| splitListIndcs | Source code |
| splitN | Source code |
| splitPath | Source code |
| splitSeatsForFractions | Source code |
| splitString | Source code |
| splitToMax | Source code |
| sprintd | Source code |
| sprintfIgnoreEscapes | Source code |
| stdOutFromCall | Source code |
| stopS | Source code |
| strAbbr | Source code |
| studyData | Source code |
| sub.graph | Source code |
| sub.graph.merge | Source code |
| subData | Source code |
| subDataFromFormula | Source code |
| subListFromRaggedIdcs | Man page Source code |
| subListFromRaggedLists | Man page Source code |
| subsetTop | Source code |
| substrM1 | Source code |
| summaryAll | Source code |
| summaryMeta | Source code |
| summaryPlot | Source code |
| summaryPlotsSave | Source code |
| summaryWB | Source code |
| symmetrizeMatrix | Source code |
| t2r | Source code |
| t_ | Source code |
| table.freq | Source code |
| table.n | Source code |
| table.n.freq | Source code |
| tempFileName | Source code |
| to.col | Source code |
| to.list | Source code |
| to.numeric | Source code |
| trimString | Source code |
| tuapply | Source code |
| undrop2col | Source code |
| undrop2row | Source code |
| unionCum | Source code |
| uniqueByCols | Source code |
| uniqueIndex | Source code Source code |
| unlist.n | Source code |
| unshift | Source code |
| v2freq | Source code |
| valueCombinations | Man page Source code |
| valueMapperRaw | Source code |
| valueMapperStandard | Source code |
| variableIndecesForData | Source code |
| variablesForData | Source code |
| vars.as.rhs | Source code |
| vector.assign | Source code |
| vector.embed | Source code |
| vector.named | Source code |
| vector.propagateValuesForward | Source code |
| vector.replace | Source code |
| vector.spread | Source code |
| vector.with.names | Source code |
| vectorIdcs | Source code |
| vectorLag | Source code |
| vectorNamed | Source code |
| vectorNormed | Source code |
| which.cols | Source code |
| which.indeces | Source code |
| which.row | Source code |
| wrapStr | Source code |
| writeFile | Source code |
