API for scfurl/m3addon
This package adds to the popular "monocle3"
| Global functions | |
|---|---|
| GMT_to_list | Man page |
| Noisify | Source code |
| add_meta_data_cds | Man page Source code |
| all.identical | Source code |
| backspin | Man page Source code |
| bimodality_coefficient | Source code |
| calcKNNgraph_euclidean | Man page Source code |
| calcKNNgraph_pearson | Man page Source code |
| calculateScoresCPP | Source code |
| calculate_gene_dispersion | Man page Source code |
| check_input | Man page |
| cluster_LSI | Man page |
| cluster_PCA | Man page Source code |
| colStdDev | Source code |
| common_features | Man page Source code |
| computeSparseRowVariances | Source code |
| density_peak | Man page Source code |
| detect_genes | Man page Source code |
| doubletFinder_v3 | Man page Source code |
| doubletdetection | Man page Source code |
| enrichmentPlot | Man page |
| estimate_corrected_score | Man page Source code |
| estimate_score | Man page Source code |
| extract_data | Man page |
| find.pK | Source code |
| get_assay | Man page |
| get_ordering_genes | Source code |
| get_selected_genes | Source code |
| groupSums | Man page |
| import_scanpy_h5 | Man page Source code |
| iterateSparseMatrixCPP | Source code |
| iterative_LSI | Man page Source code |
| kurtosis | Source code |
| lighten_darken_color | Source code |
| loadSoupX | Man page |
| load_STARsolo_data | Man page Source code |
| load_cellranger_data_h5 | Man page Source code |
| logNormCPP | Source code |
| m3addon | Man page Man page |
| m3addon-package | Man page |
| mnnCorrect_cds | Man page Source code |
| modelHomotypic | Source code |
| monocle_theme_opts | Source code |
| parallel_paramSweep_v3 | Source code |
| paramSweep_v3 | Source code |
| plot_cells_m3addon | Man page Source code |
| plot_gene_dispersion | Source code |
| plot_genes_violin | Man page |
| plot_geneset | Man page Source code |
| plot_grouped_geneset | Man page Source code |
| plot_heatmap | Man page |
| plot_pseudotime_heatmap | Man page |
| plot_rho_delta | Man page |
| preprocess_cds | Man page Source code |
| project_data | Man page Source code |
| pseudobulk | Man page Source code |
| read.cds.cellranger.h5.file | Source code |
| read.cds.starsolo.file | Source code |
| read.cellranger.h5.file | Source code |
| red_dim_plot | Man page Source code |
| reduce_dimension | Man page Source code |
| remove_duplicated_rows | Man page Source code |
| rowStdDev | Source code |
| safe_subset | Man page |
| scrublet_R | Man page |
| segment | Man page Source code |
| select_genes | Man page Source code |
| set_ordering_genes | Source code |
| set_selected_genes | Source code |
| sfc | Man page Source code |
| skewness | Source code |
| spRing | Man page Source code |
| sp_show_storage | Source code |
| sparseRowVariances | Man page |
| split_plot | Man page Source code |
| ssgsea | Man page Source code |
| subsetSM | Source code |
| summarizeSweep | Source code |
| svd_lsi | Source code |
| tf_idf_transform | Man page Source code |
| tf_idf_transform_v2 | Man page Source code |
| trimap | Man page Source code |
| vstExprsCPP | Source code |
