actualize | 'Rseb' updates verification |
build.bed | Bed generator |
calculate.mode | Mode calculation |
closest.regions | Find closets regions to reference regions. |
cmyk | CMYK color converter |
CNV.data | CNV data results example |
collapse.bed | Merger of overlapping peaks in a provided .bed file. |
color.gradient | Gradient colors generation and assignment |
combine.lists | List combiner |
computeMatrix.deeptools | Score matrix NGS data builder at specific regions (by... |
convert_sequence | Nucleic acid sequences converter. |
data.frame.to.list | Data frame conversion to a list of columns. |
data.summary | Statistical data summary generator |
deeptools.matrix | deepTools matrix example |
density.matrix | Density matrix builder |
density_plot | Plot density signal of NGS data. |
DE.status | Differential Expression status calculator for RNA-seq data |
doughnut | Donut/Doughnut plot |
evaluate.heterogeneity | Evaluate genomic heterogeneity among samples. |
floating.ceiling | Ceiling to floating values |
floating.floor | Flooring to floating values |
genomic.tracks | Genomic tracks plotter |
get.gene.name | Conversion of ENSEMBL gene IDs. |
get.single.base.score.bw | Single base bigWig score selector |
grepl.data.frame | Grep a pattern in a full data.frame. |
GSEA.to.GOnumber | Conversion of GSEA terms into Gene Ontology numbers |
IGVsnap | Script generator for Integrative Genomics Viewer (IGV) batch... |
incucyte | Incucyte analysis tool |
install.pkg.source | Package installer from source archive. |
intersect.bedtools | Intersect two or more bed files (by 'bedtools intersect'... |
intersect.regions | Genomic regions overlapper |
is.color | is.color |
is.nan_df | 'is.nan()' applied to a data.frame |
mass.to.volume | Get solvent volume to make a solution with a given amount of... |
molarity.to.mass | Get solvent volume to make a solution with a given amount of... |
move.df.col | Function to change easily the order of specific columns in a... |
multi.bigwig.mean | Multi-bigWig average tool |
pkg.check | Check package installation. |
pkg.version | Get session info and package versions. |
plot.density.differences | Plot the distribution of overall NGS density at specific... |
plot.density.profile | Plot of NGS density signal at specific regions from deepTools... |
plot.density.profile.smooth | Plot of NGS density signal at specific regions from deepTools... |
plot.density.summary | Plot the distribution of overall NGS density at specific... |
plot.gsea | GSEA plotter |
plot.multi.gsea | GSEA plotter |
plot.NES | GSEA analyses NES plotter |
pStars | P-value significance stars definer. |
qPCR.results | qPCR RNA expression results example |
qPCR.results.rep1 | qPCR RNA expression results example (rep1) |
qPCR.results.rep2 | qPCR RNA expression results example (rep2) |
qPCR.rna.exp | qPCR RNA expression analyses tool. |
qPCR.rna.mean.reps | qPCR RNA expression experimental replicates mean calculator. |
read.computeMatrix.file | 'computeMatrix' *.gz file reader |
reorder.samples.computeMatrix | Sample reorderer computeMatrix file |
restore_packages | Restores packages installed from a .rda file. |
restriction.sites.to.bed | Generator of a bed file for enzymatic restriction sites. |
RNAseq | RNA-seq example |
sort.bed | Sorter function for .bed files. |
store_packages | Stores the information of installed packages in a .rda file. |
substract.bw | Combination of two or more list in a unique one. |
uniform.x.axis | Plot X-axis uniforming |
uniform.y.axis | Plot Y-axis uniforming |
update_pkgs | function to automatically update the R packages. |
venn.overlap | VennDiagram from region overlaps |
volcano | Volcano plot generator for RNA-seq data. |
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