Files in seriph78/COTAN
COexpression Tables ANalysis
.Rbuildignore
.gitignore
.lintr
DESCRIPTION
NAMESPACE
NEWS.md
R/AllClasses.R
R/AllConversions.R
R/AllGenerics.R
R/COTAN-estimators.R
R/COTAN-getters.R
R/COTAN-modifiers.R
R/DEAOnClusters.R
R/ECD-plot.R
R/GDI-plot.R
R/UMAP-plot.R
R/UTCheckers.R
R/automaticCOTANObjectCreation.R
R/calculateCoex-method.R
R/cellsUniformClustering.R
R/checkClusterUniformity.R
R/clean-method.R
R/clean-plot.R
R/clustersDeltaExpression.R
R/clustersMarkersHeatmapPlot.R
R/clustersSummaryPlot.R
R/data.R
R/establishGenesClusters.R
R/findClustersMarkers.R
R/geneSetEnrichment.R
R/genesStatistics.R
R/heatmap-plot.R
R/librarySize-plot.R
R/mergeUniformCellsClusters.R
R/mitochondrialPercentage-plot.R
R/numericUtilities.R
R/reorderClusterization.R
R/scatter-plot.R
R/utilities.R
README.md
data/ERCCraw.rda
data/raw.dataset.rda
data/test.dataset.clusters1.rda
data/test.dataset.clusters2.rda
data/test.dataset.rda
data/vignette.merge.clusters.rda
data/vignette.merge2.clusters.rda
data/vignette.split.clusters.rda
inst/WORDLIST
man/COTAN-class.Rd
man/COTAN_Legacy.Rd
man/COTAN_ObjectCreation.Rd
man/CalculatingCOEX.Rd
man/ClustersList.Rd
man/Conversions.Rd
man/Datasets.Rd
man/GenesStatistics.Rd
man/HandleMetaData.Rd
man/HandleStrings.Rd
man/HandlingClusterizations.Rd
man/HandlingConditions.Rd
man/HeatmapPlots.Rd
man/Installing_torch.Rd
man/LoggingFunctions.Rd
man/MultiThreading.Rd
man/NumericUtilities.Rd
man/ParametersEstimations.Rd
man/RawDataCleaning.Rd
man/RawDataGetters.Rd
man/UniformClusters.Rd
man/UniformTranscriptCheckers.Rd
man/getColorsVector.Rd
tests/outputTestDatasetCreation.R
tests/spelling.R
tests/testthat.R
tests/testthat/GDI.test.RDS
tests/testthat/cells.names.test.RDS
tests/testthat/cluster_data_merged.RDS
tests/testthat/clusters1.RDS
tests/testthat/coex.test.RDS
tests/testthat/coex.test.cluster1.RDS
tests/testthat/dispersion.test.RDS
tests/testthat/genes.coex.space.RDS
tests/testthat/genes.names.test.RDS
tests/testthat/lambda.test.RDS
tests/testthat/nu.test.RDS
tests/testthat/pca.clusters.RDS
tests/testthat/pca.tb.RDS
tests/testthat/pca.test.RDS
tests/testthat/pval.test.RDS
tests/testthat/pval.test.cluster1.RDS
tests/testthat/raw.norm.test.RDS
tests/testthat/test-AllClasses.R
tests/testthat/test-COTAN-estimators.R
tests/testthat/test-COTAN-getters.R
tests/testthat/test-COTAN-modifiers.R
tests/testthat/test-calculateCoex-method.R
tests/testthat/test-cellsUniformClustering.R
tests/testthat/test-clean-method.R
tests/testthat/test-convertSingleCellExperiment.R
tests/testthat/test-establishGenesClusters.R
tests/testthat/test-mergeUniformCellsClusters.R
tests/testthat/test-utilities.R
vignettes/Guided_tutorial_v2.Rmd
