Files in seriph78/COTAN

COexpression Tables ANalysis

.Rbuildignore

.gitignore

.lintr

DESCRIPTION

NAMESPACE

NEWS.md R/AllClasses.R R/AllGenerics.R R/COTAN-estimators.R R/COTAN-getters.R R/COTAN-modifiers.R R/DEAOnClusters.R R/ECD-plot.R R/GDI-plot.R R/UMAP-plot.R R/automaticCOTANObjectCreation.R R/calculateCoex-method.R R/cellsUniformClustering.R R/checkClusterUniformity.R R/clean-method.R R/clean-plot.R R/clustersDeltaExpression.R R/clustersMarkersHeatmapPlot.R R/clustersSummaryPlot.R R/data.R R/establishGenesClusters.R R/findClustersMarkers.R R/geneSetEnrichment.R R/genesStatistics.R R/heatmap-plot.R R/librarySize-plot.R R/mergeUniformCellsClusters.R R/mitochondrialPercentage-plot.R R/numericUtilities.R R/reorderClusterization.R R/scatter-plot.R R/utilities.R README.md

data/ERCCraw.rda

data/raw.dataset.rda

data/test.dataset.clusters1.rda

data/test.dataset.clusters2.rda

data/test.dataset.rda

inst/WORDLIST

man/COTAN-Legacy.Rd man/COTAN-class.Rd man/COTANObjectCreation.Rd man/CalculatingCOEX.Rd man/ClustersList.Rd man/Datasets.Rd man/GenesStatistics.Rd man/HandleMetaData.Rd man/HandlingClusterizations.Rd man/HandlingConditions.Rd man/HeatmapPlots.Rd man/Installing_torch.Rd man/LoggingFunctions.Rd man/NumericUtilities.Rd man/ParametersEstimations.Rd man/RawDataCleaning.Rd man/RawDataGetters.Rd man/UniformClusters.Rd man/getColorsVector.Rd tests/outputTestDatasetCreation.R tests/spelling.R tests/testthat.R

tests/testthat/GDI.test.RDS

tests/testthat/cells.names.test.RDS

tests/testthat/cluster_data_merged.RDS

tests/testthat/clusters1.RDS

tests/testthat/coex.test.RDS

tests/testthat/coex.test.cluster1.RDS

tests/testthat/dispersion.test.RDS

tests/testthat/genes.coex.space.RDS

tests/testthat/genes.names.test.RDS

tests/testthat/lambda.test.RDS

tests/testthat/nu.test.RDS

tests/testthat/pca.clusters.RDS

tests/testthat/pca.tb.RDS

tests/testthat/pca.test.RDS

tests/testthat/pval.test.RDS

tests/testthat/pval.test.cluster1.RDS

tests/testthat/raw.norm.test.RDS

tests/testthat/test-AllClasses.R tests/testthat/test-COTAN-estimators.R tests/testthat/test-COTAN-getters.R tests/testthat/test-COTAN-modifiers.R tests/testthat/test-calculateCoex-method.R tests/testthat/test-cellsUniformClustering.R tests/testthat/test-clean-method.R tests/testthat/test-establishGenesClusters.R tests/testthat/test-mergeUniformCellsClusters.R tests/testthat/test-utilities.R

vignettes/.gitignore

vignettes/Guided_tutorial_v2.Rmd

seriph78/COTAN documentation built on May 2, 2024, 11:17 a.m.