shashidhar22/LymphoSeq2: Analyze high-throughput sequencing of T and B cell receptors

This R package analyzes high-throughput sequencing of T and B cell receptor complementarity determining region 3 (CDR3) sequences generated by Adaptive Biotechnologies' ImmunoSEQ assay. Its input comes from tab-separated value (.tsv) files exported from the ImmunoSEQ analyzer.

Getting started

Package details

AuthorDavid Coffey <dcoffey@fredhutch.org>, Shashidhar Ravishankar <sravisha@frehutch.org>
Bioconductor views Alignment MultipleSequenceAlignment Sequencing Software TargetedResequencing Technology
MaintainerShashidhar Ravishankar <sravisha@fredhutch.org>
LicenseArtistic-2.0
Version1.0.0.0
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("shashidhar22/LymphoSeq2")
shashidhar22/LymphoSeq2 documentation built on Aug. 4, 2020, 12:09 a.m.