sampledSummary: Sample repertoire

In shashidhar22/LymphoSeq2: Analyze high-throughput sequencing of T and B cell receptors

Sample repertoire

Description

Sample repertoire

Usage

sampledSummary(study_table, min_count)

Arguments

study_table	A tibble consisting of antigen receptor sequencing imported by the LymphoSeq2 function readImmunoSeq(). "junction_aa", "duplicate_count", and "duplicate_frequency" are required columns. Note that clonality is usually calculated from productive junction sequences. Therefore, it is not recommended to run this function using a productive sequence list aggregated by amino acids.
min_count	The minimum depth to which each repertoire in the study must be sampled to. Default 1000 (the default)

Value

Tibble summarizing the sequence information for each repertoire_id randomly sampled to the minimum count

shashidhar22/LymphoSeq2 documentation built on Jan. 16, 2024, 4:29 a.m.