shashidhar22/LymphoSeq2
Analyze high-throughput sequencing of T and B cell receptors

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Vignettes
Functions
123
Source code
50
Man pages
59
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shashidhar22/LymphoSeq2: Analyze high-throughput sequencing of T and B cell receptors
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API

API for shashidhar22/LymphoSeq2
Analyze high-throughput sequencing of T and B cell receptors

Global functions
LymphoSeq2 Man page
LymphoSeq2-package Man page
aggreateSeq Source code
alignSeq Man page Source code
antigen_db Man page
bhattacharyyaCoefficient Man page Source code
calculateCounts Man page Source code
chordDiagramVDJ Man page Source code
clonalRelatedness Man page Source code
clonality Man page Source code
cloneTrack Man page Source code
collpase_chains Man page Source code
commonSeqs Man page Source code
commonSeqsBar Man page Source code
commonSeqsPlot Man page Source code
commonSeqsVenn Man page Source code
countKmer Man page Source code
differentialAbundance Man page Source code
exportFasta Man page Source code
findSeq Man page Source code
fisherFunction Man page Source code
geneFreq Man page Source code
getAIRRFields Source code
getFileType Source code
getGliphTable Man page Source code
getLorenz Man page Source code
getRelatedness Man page Source code
getStandard Source code
highlightPlot Man page Source code
iterativeSummary Man page Source code
kmerPlot Man page Source code
lorenzCurve Man page Source code
mostPrevalent Man page Source code
pairwiseNetwork Man page Source code
pairwisePlot Man page Source code
percentSI Man page Source code
phyloTree Man page Source code
plotAlignment Man page Source code
plotRarefactionCurve Man page Source code
plotTrack Man page Source code
plotTrackSingular Man page Source code
prepDB Man page Source code
prevalenceTRB Man page
productiveSeq Man page Source code
publishedTRB Man page
read10x Man page Source code
readGliph Man page Source code
readImmunoSeq Man page Source code
removeSeq Man page Source code
runINext Man page Source code
sampledSummary Man page Source code
scoringMatrix Man page Source code
searchDB Man page Source code
searchPublished Man page Source code
searchSeq Man page Source code
selectChain Man page Source code
seqMatrix Man page Source code
similarityScore Man page Source code
sorensenIndex Man page Source code
standardize10x Man page Source code
summarySeq Man page Source code
topFreq Man page Source code
topSeqs Man page Source code
topSeqsPlot Man page Source code
uniqueSeqs Man page Source code
writeFasta Man page Source code
shashidhar22/LymphoSeq2 documentation built on Jan. 16, 2024, 4:29 a.m.

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