summarySeq: Get summary statistics for each repertoire_id in the analysis
In shashidhar22/LymphoSeq2: Analyze high-throughput sequencing of T and B cell receptors
summarySeq R Documentation
Get summary statistics for each repertoire_id in the analysis
Description
Get summary statistics for each repertoire_id in the analysis
Usage
summarySeq(study_table)
Arguments
study_table
A tibble consisting of antigen receptor sequencing
imported by the LymphoSeq2 function readImmunoSeq(). "junction_aa",
"duplicate_count", and "duplicate_frequency" are required columns. Note that
clonality is usually calculated from productive junction sequences.
Therefore, it is not recommended to run this function using a productive
sequence list aggregated by amino acids.
Value
Tibble summarizing the sequence information for each repertoire_id
shashidhar22/LymphoSeq2 documentation built on Jan. 16, 2024, 4:29 a.m.
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| summarySeq | R Documentation |
Get summary statistics for each repertoire_id in the analysis
Description
Get summary statistics for each repertoire_id in the analysis
Usage
summarySeq(study_table)
Arguments
study_table |
A tibble consisting of antigen receptor sequencing
imported by the LymphoSeq2 function |
Value
Tibble summarizing the sequence information for each repertoire_id
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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