getRelatedness: Calculate relatedness
In shashidhar22/LymphoSeq2: Analyze high-throughput sequencing of T and B cell receptors
View source: R/clonalRelatedness.R
getRelatedness R Documentation
Calculate relatedness
Description
Calculates the clonal relatedness of a repertoire.
Usage
getRelatedness(study_table, edit_distance = 10)
Arguments
study_table
A tibble of raw or productive nucleotide junction
sequences."junction" and "duplicate_count" are required columns.
edit_distance
An integer giving the minimum edit distance that the
sequence must be less than or equal to. See details below. Deafault: 10
shashidhar22/LymphoSeq2 documentation built on Jan. 16, 2024, 4:29 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/clonalRelatedness.R
| getRelatedness | R Documentation |
Calculate relatedness
Description
Calculates the clonal relatedness of a repertoire.
Usage
getRelatedness(study_table, edit_distance = 10)
Arguments
study_table |
A tibble of raw or productive nucleotide junction sequences."junction" and "duplicate_count" are required columns. |
edit_distance |
An integer giving the minimum edit distance that the sequence must be less than or equal to. See details below. Deafault: 10 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.