similarityScore: Similarity score
In shashidhar22/LymphoSeq2: Analyze high-throughput sequencing of T and B cell receptors
View source: R/scoringMatrix.R
similarityScore R Documentation
Similarity score
Description
Calculates the similarity score of two samples.
Usage
similarityScore(sample_list)
Arguments
sample_list
A list of two tibble corresponding derived from the
productiveSeq() function in LymphoSeq2. "duplicate_frequency",
"junction_aa", and "repertoire_id" columns are necessary for the calculation
of the Bhattacharyya coefficient.
Value
Returns the similarity score, a measure of the amount of
overlap between two samples. The value ranges from 0 to 1 where 1 indicates
the sequence frequencies are identical in the two samples and 0
indicates no shared frequencies.
See Also
scoringMatrix()
shashidhar22/LymphoSeq2 documentation built on Jan. 16, 2024, 4:29 a.m.
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View source: R/scoringMatrix.R
| similarityScore | R Documentation |
Similarity score
Description
Calculates the similarity score of two samples.
Usage
similarityScore(sample_list)
Arguments
sample_list |
A list of two tibble corresponding derived from the
|
Value
Returns the similarity score, a measure of the amount of overlap between two samples. The value ranges from 0 to 1 where 1 indicates the sequence frequencies are identical in the two samples and 0 indicates no shared frequencies.
See Also
scoringMatrix()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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