allocateCVI | Allocate sequences for cross validation by identity. |
classify | Tree-based sequence classification. |
conversion | Convert sequences between binary and character string... |
demultiplex | Demultiplex merged FASTQ |
disambiguate | Convert oligonucleotide sequences into regular expressions. |
encoding | Encode and decode profile HMMs in raw byte format. |
expand | Expand an existing classification tree. |
get_lineage | Get full lineage details from a taxonomic ID number. |
get_taxID | Get taxon ID from taxonomy database. |
hash | Convert sequences to MD5 hashes. |
insect | Informatic sequence classification trees. |
join | Concatenate DNAbin objects while preserving attributes. |
learn | Informatic sequence classification tree learning. |
manipulate | Further bit-level manipulation of DNA and amino acid... |
prune_taxonomy | Prune taxonomy database. |
purge | Identify and remove erroneous reference sequences. |
qfilter | Quality filtering for amplicon sequences. |
rc | Reverse complement DNA in character string format. |
read | Read FASTA and FASTQ files. |
replicate | Dereplicate and rereplicate sequence datasets. |
samoa | Table of marine COI amplicon sequence variants from American... |
searchGB | Query the NCBI GenBank database. |
shave | Shave ends from DNA and amino acid sequences |
stitch | Paired-end read stitching. |
taxonomy | Download taxonomy database. |
trim | Trim primer and/or index sequences. |
virtualFISH | Virtual _in situ_ hybridization. |
virtualPCR | Virtual PCR. |
whales | Cetacean 16S rDNA sequences. |
whale_taxonomy | Cetacean section of NCBI taxonomy database. |
write | Write sequences to text in FASTA or FASTQ format. |
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