Description Usage Arguments Details Value Author(s) References Examples
This function converts DNA or amino acid sequences to 128-bit MD5 hash values for efficient duplicate identification and dereplication.
1 | hash(x)
|
x |
a sequence or list of sequences, either in character string, character vector, or raw byte format (eg DNAbin or AAbin objects). |
This function uses the md5
function from the openSSL library
(https://www.openssl.org/)
to digest sequences to 128-bit hashes.
These can be compared using base functions such
as duplicated
and unique
, for fast identification and
management of duplicate sequences in large datasets.
a character vector.
Shaun Wilkinson
Ooms J (2017) openssl: toolkit for encryption, signatures and certificates based on OpenSSL. R package version 0.9.7. https://CRAN.R-project.org/package=openssl
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