samoa: Table of marine COI amplicon sequence variants from American...
In shaunpwilkinson/insect: Informatic Sequence Classification Trees
Description
This matrix contains counts of COI amplicon sequence variants (ASV)
extracted from autonomous reef monitoring structures (ARMS) in
Ofu, American Samoa. Unpublished data courtesy of Molly Timmers (NOAA).
Usage
1
Format
a 2 x 16 integer matrix containing abundance counts of 16 ASVs from
two sites. This table contains the first 16 rows of the 'seqtab.nochim' output from
the DADA2 pipeline (https://benjjneb.github.io/dada2/tutorial.html).
The column names contain the DNA sequences of the ASVs, and row names
correspond with site codes.
shaunpwilkinson/insect documentation built on Aug. 9, 2021, 5 a.m.
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Description
This matrix contains counts of COI amplicon sequence variants (ASV) extracted from autonomous reef monitoring structures (ARMS) in Ofu, American Samoa. Unpublished data courtesy of Molly Timmers (NOAA).
Usage
1 |
Format
a 2 x 16 integer matrix containing abundance counts of 16 ASVs from two sites. This table contains the first 16 rows of the 'seqtab.nochim' output from the DADA2 pipeline (https://benjjneb.github.io/dada2/tutorial.html). The column names contain the DNA sequences of the ASVs, and row names correspond with site codes.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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