fdrCsSAM: Computes FDRs in csSAM Models

In shenorrLab/csSAM: csSAM - cell-specific Significance Analysis of Microarrays

Description

Computes FDRs in csSAM Models

Usage

fdrCsSAM(G, cc, y, rhat, nperms, alternative = c("all", "two.sided",
  "greater", "less"), ..., verbose = TRUE)

Arguments

G	Matrix of gene expression, columns ordered in the same order at the cell-frequency matrix (n by p, n samples, p genes)
cc	Matrix of cell-frequency. (n by k, n samples, k cell-types)
y	A numeric vector of group association of each sample. Either 1 or 2.
rhat	The contrast in cell-type expression for each cell-type as observed between the two groups being compared.
nperms	The number of permutations to perform.
alternative	Type of test to conduct. If "all" (default) then all althernative hypothesis are tested.
...	other arguments passed to csSAMfit.
verbose	Toggles verbose messages.

shenorrLab/csSAM documentation built on May 29, 2019, 9:23 p.m.