plot.csSAMfit: Plotting csSAM FDR

In shenorrLab/csSAM: csSAM - cell-specific Significance Analysis of Microarrays

Description

Plotting csSAM FDR

Usage

## S3 method for class 'csSAMfit'
plot(x, subset = NULL, alternative = "two.sided",
  by = c("cell-type", "alternative"), xlab = "# called", ylab = "FDR",
  ylim = c(0, 1), ...)

Arguments

x	a csSAM fit as returned by csSAMfit
subset	character or index vector that specifies the subset of cell types to include in the plot.
alternative	test alternative hypothesis for which FDRs are shown. Multiple alternatives can be plotted at once ("two.sided", "greater", "less"). Use alternative = "all" to plot all of them.
by	specifies the facetting criteria. Default is produces one panel per cell type, each showing FDR for the selected alternative(s).
xlab, ylab	axis labels
ylim	y-axis range
...	unused trailing arguments for S3 conformity. An error will be thrown if any unsused argument are passed to the function.

shenorrLab/csSAM documentation built on May 29, 2019, 9:23 p.m.