Man pages for sidora-tools/eager2poseidon
Automatically fill in Missing Metadata in a Janno File
| collapse_for_poseidon | Collapse value for poseidon janno |
| collate_external_results | Collect Pandora and Eager results |
| compile_across_lib_results | Compile library level results to sample level |
| compile_eager_result_tables | Compile eager results tables |
| create_contamination_note | Create contamination note from eager results for poseidon |
| fill_genetic_sex | Add genetic sex information to the input janno, throwing a... |
| fill_in_janno | Fill in a janno table |
| format_for_poseidon | Internal function to convert information from eager lingo to... |
| get_individual_pandora_data | Pull pandora information for specific individual IDs |
| import_eager_results | Collect poseidon janno data from an eager TSV and its... |
| import_pandora_data | Collect poseidon janno data from pandora |
| infer_genetic_sex | Infer Poseidon encoded genetic sex from relative X/Y coverage |
| library_weighted_mean | Calculate the weighted mean at the library level |
| read_eager_stats_table | Extract poseidon information from the general stats table of... |
| read_eager_tsv | Read content of an eager TSV and convert information to... |
| select_calibration_curve | Infer the correct calibration curve for quickcalibrate, based... |
| standardise_janno | Standardise janno file |
