get_individual_pandora_data: Pull pandora information for specific individual IDs
In sidora-tools/eager2poseidon: Automatically fill in Missing Metadata in a Janno File
View source: R/pandora_from_janno.R
get_individual_pandora_data R Documentation
Pull pandora information for specific individual IDs
Description
Query pandora for information across tabs Site and Sequencing, for a provided set of individual IDs.
Usage
get_individual_pandora_data(sample_ids, credentials)
Arguments
sample_ids
character. A vector of individual IDs to pull pandora data for.
credentials
character. Path to a credentials file containing four lines listing the database host,
the port of the database server, user and password, respectively.
Passed to get_pandora_connection
Value
A tibble containing the pandora information for individuals present in the janno file, from Site to Sequencing.
sidora-tools/eager2poseidon documentation built on May 12, 2023, 11:58 p.m.
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View source: R/pandora_from_janno.R
| get_individual_pandora_data | R Documentation |
Pull pandora information for specific individual IDs
Description
Query pandora for information across tabs Site and Sequencing, for a provided set of individual IDs.
Usage
get_individual_pandora_data(sample_ids, credentials)
Arguments
sample_ids |
character. A vector of individual IDs to pull pandora data for. |
credentials |
character. Path to a credentials file containing four lines listing the database host, the port of the database server, user and password, respectively. Passed to get_pandora_connection |
Value
A tibble containing the pandora information for individuals present in the janno file, from Site to Sequencing.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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