read_eager_tsv: Read content of an eager TSV and convert information to...
In sidora-tools/eager2poseidon: Automatically fill in Missing Metadata in a Janno File
View source: R/read_eager_results.R
read_eager_tsv R Documentation
Read content of an eager TSV and convert information to poseidon janno columns
Description
Read content of an eager TSV and convert information to poseidon janno columns
Usage
read_eager_tsv(eager_tsv_fn, keep_only = "none")
Arguments
eager_tsv_fn
character. Path to the TSV file used as input for the eager run.
keep_only
character. Can be set to "none", "single", or "double".
If set to 'single; or 'double', will keep only information for libraries with the specified strandedness.
If 'none', all information is retained.
Value
A tibble with columns for information for janno columns Sample_Name, Nr_Libraries, Capture_Type, UDG,
and Library_Built, and an additional column with the IDs of the libraries included for each sample. The latter
is used to pull only relevant information from the eager results tables.
sidora-tools/eager2poseidon documentation built on May 12, 2023, 11:58 p.m.
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View source: R/read_eager_results.R
| read_eager_tsv | R Documentation |
Read content of an eager TSV and convert information to poseidon janno columns
Description
Read content of an eager TSV and convert information to poseidon janno columns
Usage
read_eager_tsv(eager_tsv_fn, keep_only = "none")
Arguments
eager_tsv_fn |
character. Path to the TSV file used as input for the eager run. |
keep_only |
character. Can be set to "none", "single", or "double". If set to 'single; or 'double', will keep only information for libraries with the specified strandedness. If 'none', all information is retained. |
Value
A tibble with columns for information for janno columns Sample_Name, Nr_Libraries, Capture_Type, UDG, and Library_Built, and an additional column with the IDs of the libraries included for each sample. The latter is used to pull only relevant information from the eager results tables.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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