infer_genetic_sex: Infer Poseidon encoded genetic sex from relative X/Y coverage

In sidora-tools/eager2poseidon: Automatically fill in Missing Metadata in a Janno File

Infer Poseidon encoded genetic sex from relative X/Y coverage

Description

Infer Poseidon encoded genetic sex from relative X/Y coverage

Usage

infer_genetic_sex(
  x_rate,
  y_rate,
  XX_cutoffs = c(0.7, 1.2, 0, 0.1),
  XY_cutoffs = c(0.2, 0.6, 0.3, 0.6)
)

Arguments

x_rate	double. The relative coverage on the X chromosome.
y_rate	double. The relative coverage on the Y chromosome.
XX_cutoffs	numeric. A vector containing the minimum x_rate, maximum x_rate, minimum y_rate and maximum y_rate for XX calls.
XY_cutoffs	numeric. A vector containing the minimum x_rate, maximum x_rate, minimum y_rate and maximum y_rate for XY calls.

Value

character. The inferred poseidon-encoded genetic sex.

sidora-tools/eager2poseidon documentation built on May 12, 2023, 11:58 p.m.