fill_genetic_sex: Add genetic sex information to the input janno, throwing a...
In sidora-tools/eager2poseidon: Automatically fill in Missing Metadata in a Janno File
View source: R/janno_operations.R
fill_genetic_sex R Documentation
Add genetic sex information to the input janno, throwing a warning if any changes happen, so users know to update their .fam/.ind files
Description
Add genetic sex information to the input janno, throwing a warning if any changes happen, so users know to update their .fam/.ind files
Usage
fill_genetic_sex(input_janno_table, genetic_sex_table)
Arguments
input_janno_table
tibble. A standardised janno tibble, as returned by standardise_janno.
genetic_sex_table
tibble. A tibble containing the Poseidon_Id and Sex of inferred genetic sex of each sample, as well as a Sex_Determination_Note
Value
tibble. A tibble with filled in Genetic_Sex information.
A warning is printed if any entries have been updated, requesting manual changes to be made to the .fam/.ind files of the poseidon package.
sidora-tools/eager2poseidon documentation built on May 12, 2023, 11:58 p.m.
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View source: R/janno_operations.R
| fill_genetic_sex | R Documentation |
Add genetic sex information to the input janno, throwing a warning if any changes happen, so users know to update their .fam/.ind files
Description
Add genetic sex information to the input janno, throwing a warning if any changes happen, so users know to update their .fam/.ind files
Usage
fill_genetic_sex(input_janno_table, genetic_sex_table)
Arguments
input_janno_table |
tibble. A standardised janno tibble, as returned by standardise_janno. |
genetic_sex_table |
tibble. A tibble containing the Poseidon_Id and Sex of inferred genetic sex of each sample, as well as a Sex_Determination_Note |
Value
tibble. A tibble with filled in Genetic_Sex information. A warning is printed if any entries have been updated, requesting manual changes to be made to the .fam/.ind files of the poseidon package.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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