Man pages for singjc/mstools
OpenSWATH Mass Spectrometry Data Exploration
| as_character_null | Convert Variable to character including NULL |
| catOSWruns_ | Concatenate different run OSW tables into one table |
| check_sqlite_table | check_sqlite_table |
| codenameTounimod | Conversion from modification codename to UniMod ID |
| d_score_hist | Plot distribution of d-score |
| filterOSWdb | Filter and OSW db file |
| filterPQPdb | Filter and PQP db file |
| filterSQMASSdb | Filter and sqMass db file |
| generateUniModMapping_ | Generate a UniMod mapping table |
| getChromatogramDataPoints_ | Extract Chromatographic data (Retention Time and Intensity)... |
| getFDREstimatePerformance | get qunatification per run plot |
| getIdentificationsBarplot | get qunatification per run plot |
| getListObj | Find and Extract an obj from a structured list |
| getModificationPosition_ | Get Modificiation position from modified sequence. Currently... |
| getmzPntrs | Get a list of mz Objects |
| getOSWData_ | Extract data from OpenSwathWorkflow .osw results file |
| getPepLibData_ | Extract data from a PQP library file |
| getPrecisionRecall | get precision-recall plot and data |
| getQuantificationplot | get qunatification per run plot |
| getROC | get Receiver Operator Characterostocs plot and data |
| getRunID_ | Extract Run ID information from a osw file fiven a run name |
| getsqMassPntrs | Get a list of data.tables for chromatrogram id mappings |
| getTransitionScores_ | Extract Transition Information from .osw results file |
| getXIC | Plot and Extracted Ion Chromatogram |
| isListObj | Find if an object exists in a list Searches name structure... |
| listTostring | Convert list object to printable character vectory |
| log_setup | Logging system setup |
| Mode | Mode |
| osw_reports_visualization | mstools osw reports visualization environment for various... |
| pairwise_comparison | Pair-Wise Comparison |
| pairwise_comparison_vectorized | Pair-Wise Comparison vectorized |
| Score_IPF_Present | Check is SCORE_IPF is in database |
| unimod_mapping | A unimod_mapping table |
| unimodTocodename | Conversion from UniMod ID to modification name |
| unimodTouniisoid | Conversion from UniMod ID to a unique string isomeric id |
| XICMasterPlotFcn_ | Master Plotting function for plotting XIC's |
