catOSWruns_: Concatenate different run OSW tables into one table
In singjc/mstools: OpenSWATH Mass Spectrometry Data Exploration

Description Usage Arguments Value Author(s)

This function can be used to extract OSW data for several runs from an OSW file, and concatenate them into one table with a run id

catOSWruns_(
  sqMass_files,
  in_osw,
  which_m_score = "m_score",
  m_score_filter = 0.05,
  report_top_single_result = T,
  run_sub_expression = NULL,
  mod_exclusion = NULL,
  mod_grouping = NULL,
  ...
)

`sqMass_files`	An array of character paths to the chromatograms that have corresponding names in the OSW file.
`in_osw`	A character vector of the absolute path and filename of the osw file. (Must be .osw format)
`which_m_score`	A character vector indicating which m_score to use. (Options: m_score or ms2-m_score. Default: 'm_score')
`m_score_filter`	A numeric vector indicating the threshold m_score cut-off value for filtering. (Defualt: 0.05)
`report_top_single_result`	A logical value indificating to keep only the results with the lowest m_score. (Default: TRUE)
`mod_exclusion`	A vector of unimod record id modifications to exclude, and replace by nothing. Example: c("35")
`mod_grouping`	A dataframe contained uninod ids and random characters to group isomers by. Example: data.frame( record_id=c(4, 259, 267), rand_char_id="B", stringsAsFactors = F )