getPepLibData_: Extract data from a PQP library file
Description Usage Arguments Value Author(s)
View source: R/getPepLibData.R
Description
This function can be used to extract information from the PQP library file. This can also be used to extract the transition informaiton from and OSW results file.
Usage
1 | getPepLibData_(libfile, peptide_id = "", mod_peptide_id = c("", ""))
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Arguments
libfile |
A character vector of the absolute path and filename of the library file. (Must be .pqp format) |
peptide_id |
A character vector for extraction of a specific peptide. I.e. 'ANSSPTTNIDHLK' |
mod_peptide_id |
An array of two string vectors indicating a specific modified peptide sequence with both UniMod annotation and actual modification name to extract information for. I.e. c(ANS(Phos)SNSLK, ANS(UniMod:21)SNSLK) (Default: ”) |
Value
A data.table containing spectral library information
Author(s)
Justin Sing https://github.com/singjc
