filterPQPdb: Filter and PQP db file

Description Usage Arguments Value Author(s)

View source: R/filterPQPdb.R

Description

This function can be used to filter an PQP db file given a list of unmodified sequences

Usage

1
2
3
4
5
filterPQPdb(
  pqp_file,
  unmodified_sequence_filte,
  modified_sequence_filter = NULL
)

Arguments

pqp_file

A character vector of the absolute path and filename of the sqMass file. (Must be .osw format)

modified_sequence_filter

A character vector for extraction of specific peptide(s) with modifications

unmodified_sequence_filter

A character vector for extraction of specific peptide(s). I.e. c('ANSSPTTNIDHLK', 'ESTAEPDSLSR', 'NLSPTKQNGKATHPR', 'KDSNTNIVLLK', 'NKESPTKAIVR')

Value

A data.table containing spectral library information

Author(s)

Justin Sing https://github.com/singjc


singjc/mstools documentation built on June 28, 2020, 8:10 p.m.