getIdentificationsBarplot: get qunatification per run plot

In singjc/mstools: OpenSWATH Mass Spectrometry Data Exploration

Description

This function can be used to generate a qunatification box plot per run

Usage

getIdentificationsBarplot(
  data,
  data_to_show = NULL,
  include_GT = NULL,
  var_order = NULL,
  show_cumulative = FALSE,
  fdr_threshold = 0.05,
  p.title = NULL,
  dataset = ""
)

Arguments

fdr_threshold	A numeric vector to add fdr threshold lines to the plot. Default: fdr_threshold = 0.05
p.title	A character to label plot
dataset	A character vector specifying special label mappings for specific dataset. Options: "", "Synth_Dilution"
osw_df_bm	A data.table containing osw results with bitmap information (TPs, FPs, TNs, FNs)
ipf_df_bm	A data.table containing ipf results with bitmap information

Value

A ggplot object

Author(s)

Justin Sing https://github.com/singjc

singjc/mstools documentation built on June 28, 2020, 8:10 p.m.