getFDREstimatePerformance: get qunatification per run plot

In singjc/mstools: OpenSWATH Mass Spectrometry Data Exploration

Description

This function can be used to generate a qunatification box plot per run

Usage

getFDREstimatePerformance(
  data,
  p.title = NULL,
  true_label = "TP",
  global_fdr_label = "ipf_fdr",
  local_fdr_label = "ipf_lfdr"
)

Arguments

data	A data.table containing intensity information
p.title	A character to label plot
true_label	A character vector indicating the column header name containing true class labels
global_fdr_label	A character vector indicating the column header name containing the global fdr estimates
local_fdr_label	A chracter vector indicating the column header name containing the local fdr estimates

Value

A list containg a data.table of the data used to make performance and plot, and a ggplot object of the performance plot

Author(s)

Justin Sing https://github.com/singjc

singjc/mstools documentation built on June 28, 2020, 8:10 p.m.