getPrecisionRecall: get precision-recall plot and data

In singjc/mstools: OpenSWATH Mass Spectrometry Data Exploration

Description

This function can be used to generate the pseudo-recall plot

Usage

getPrecisionRecall(
  data,
  scores,
  p.title = NULL,
  fdr_threshold = c(0.01, 0.05),
  precrecall_zoom = NULL
)

Arguments

data	A data.table containing p-value/q-value score and true class labels
scores	A character vector of the data column name scores to compute the pseudo-recall for
p.title	A character to label plot
fdr_threshold	A numeric vector to add fdr threshold lines to the plot. Default: fdr_threshold = c(0.01, 0.05)

Value

A list containing the ROC data and a ggplot

Author(s)

Justin Sing https://github.com/singjc

singjc/mstools documentation built on June 28, 2020, 8:10 p.m.