Files in skgallagher/InfectionTrees
Sample, Analyze, and Plot Infection Trees
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
InfectionTrees.Rproj
LICENSE
LICENSE.md
NAMESPACE
R/InfectionTrees-package.R
R/RcppExports.R
R/binary-cov-loglike.R
R/bootstrap-clusters.R
R/data.R
R/general-loglike.R
R/globals.R
R/likelihood-profiling.R
R/sample-general-cond-trees-outsider.R
R/sample-mc-binary-cov.R
R/sample-trees-fast.R
R/sample_general_cond_trees.R
R/simulate_general_outbreaks.R
R/summarize_binary_covariate_clusters.R
R/utils-data-table.R
R/utils-pipe.R
R/vis-A-infects-B.R
R/vis-A-infects-B.R~
README.md
_pkgdown.yml
data-raw/DATASET.R
data/tb_clean.rda
docs/404.html
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vignettes/not-built-vignettes/tb-data-base.Rmd
vignettes/not-built-vignettes/tb-data-vis.Rmd
vignettes/not-built-vignettes/tb-eda.Rmd
