importAme | R Documentation |
This imports AME results using the "ame.tsv" output, and optionally the "sequences.tsv" output if run with "method = fisher". AME results differ based on the method used, thus this must be set on import or the column names will be incorrect.
importAme(path, method = "fisher", sequences = FALSE)
path |
path to ame results file ("ame.tsv") |
method |
ame run method used (one of: c("fisher", "ranksum", "dmhg3", "dmhg4", "pearson", "spearman")). Default: "fisher". |
sequences |
FALSE or path to sequences file (only valid for method = "fisher") |
data.frame with method-specific results. See [AME results](http://meme-suite.org/doc/ame-output-format.html) webpage for more information. If sequences is set to a path to the sequences.tsv and method = "fisher", the list-column 'sequences' will be appended to resulting data.frame.
[runAme()]
ame_tsv <- system.file("extdata", "ame.tsv", package = "memes", mustWork = TRUE)
importAme(ame_tsv)
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