test/test_shiny.r
In sooyongl/ESS:
rm(list = ls())
# Input Setting -----------------------------------------
root <- rprojroot::find_rstudio_root_file()
data_path <- file.path(root, "test/data")
source_path <- file.path(root, "test/original")
source(file.path("shiny", "global.R"))
input <- list()
# input$tests <- c("M4","R5")
input$tests <- c("M3")
input$targets <- "ALD"#
input$WESS = F
input$threshold = T
input$median = "modal"
path <- fs::dir_ls(data_path)[1]
input$loc <- "Loc_RP67"
# shinyServer(function(input, output, session) {
# shiny APP -----------------------------------------
# Data Import
#--------------------------------------------------------------
# imprt_data <- #reactive({
# path <- input$setups$datapath
imprt_data <- read_data(path)
#return(temp)
# })
data_list <- data_ready(imprt_data)
setup_data <- data_list[["setup_data"]]
rating_data <- data_list[["rating_data"]]
item_data <- data_list[["item_data"]]
examinee_data <- data_list[["examinee_data"]]
#
#
# observeEvent(input$import, {
# output$setting <- renderTable({
# imprt_data[[1]]},
# striped = T,
# align = "c",
# width = '70%',
# caption = "Setup",
# caption.placement = getOption("xtable.caption.placement", "top")
# )
# })
# #
# observeEvent(input$import, {
# output$itemtable1 <- renderTable({
#
# data_name <- names(imprt_data()[[3]])
#
# imprt_data()[[3]] %>%
# set_names(nm = c("GCA","Subject","Grade","Round","Table","Panelist","Item_ID","ALD")) %>%
# group_by(GCA, Subject, Grade, Round, Panelist) %>%
# summarise(
# `Number of Item` = n()
# )
# },
# striped = T,
# align = "c",
# width = '50%',
# caption = "Number of Items on Rating",
# caption.placement = getOption("xtable.caption.placement", "top")
# )
# })
#
# observeEvent(input$import, {
# output$itemtable2 <- renderTable({
#
# imprt_data()[[4]] %>%
# group_by(GCA) %>%
# summarise(
# `Number of Item` = n()
# )
# },
# striped = T,
# align = "c",
# width = '30%',
# caption = "Number of Items on Item Meta Data",
# caption.placement = getOption("xtable.caption.placement", "top")
# )
# })
#
# observeEvent(input$import, {
# output$text1 <- renderText({
#
# data_name <- names(imprt_data()[[3]])
#
# rating <- imprt_data()[[3]] %>%
# select(1:8) %>%
# set_names(nm = c("GCA","Subject","Grade","Round","Table","Panelist","Item_ID","ALD")) %>%
# group_by(GCA, Subject, Grade, Round, Panelist) %>%
# summarise(
# `Number of Item` = n()
# )
#
# item_data <- imprt_data()[[4]] %>%
# group_by(GCA) %>%
# summarise(
# `Number of Item` = n()
# )
#
# a1 <- rating$`Number of Item`
# a2 <- item_data$`Number of Item`
# a3 <- which((a1 - a2) != 0)
# a4 <- paste0(rating$GCA[a3], collapse = ", ")
#
# if(length(a3) == 0) {
#
# glue::glue("")
# } else {
#
# glue::glue("WARNING: Inconsistent length of items in {a4}")
#
# }
# })
# })
# Input-Information-Ready
#--------------------------------------------------------------
# observeEvent(input$import, {
# id_selected_choices <- pull_unique(setup_data(), 1)
# loc_selected_choices <-
# item_data() %>%
# select(
# which(str_detect(toupper(names(.)), toupper("loc")))
# ) %>%
# names(.)
#
# loc_selected_choices <-
# loc_selected_choices[str_detect(toupper(loc_selected_choices), toupper("Loc"))]
#
# if(sum(str_detect(loc_selected_choices, "67")) != 1){
# selected_choices <- loc_selected_choices[1]
# } else {
# selected_choices <-
# loc_selected_choices[str_detect(loc_selected_choices, "67")]
# }
#
# updateCheckboxGroupInput(
# session,
# inputId = "tests",
# label = NULL,
# choices = id_selected_choices,
# selected = id_selected_choices,
# inline = T
# )
#
# updateRadioButtons(
# session,
# inputId = "loc",
# label = NULL,
# choices = loc_selected_choices,
# selected = selected_choices,
# inline = T
# )
# })
# Data Filtering
#---------------------------------------------------------------------------
# filtered_data <-
# eventReactive(input$tests, {
# req(rating_data())
# filtered_data <- data_filter(rating_data(), input$tests)
# return(filtered_data)
# })
# Information Data Ready
#---------------------------------------------------------------------------
# Calculate Cut Scores
#---------------------------------------------------------------------------
waitress <- Waitress$new("#run_tab1", theme = "overlay", infinite = TRUE)
res <- reactiveValues()
information <- reactiveValues()
tab0 <- reactiveValues()
tab1 <- reactiveValues()
tab2 <- reactiveValues()
tab3 <- reactiveValues()
tab4 <- reactiveValues()
observeEvent(input$run_tab1, # Estimate Cut Score and Cut Point
{
waitress$start()
res$ess <- runESS(
data_list,
grade = input$tests,
ald = input$ald,
location = input$loc,
WESS = input$WESS,
modal = F,
threshold = F
)
information <- ess@information
tab0 <- ess@tab0
tab1 <- ess@tab1
tab2 <- ess@tab2
tab3 <- ess@tab3
tab4 <- ess@tab4
})
#
# Individual Cut Scores
#
for_report <- reactiveValues()
observeEvent(input$run_tab1, # For Individual Table output
{
output$indi <-
DT::renderDT({
for_report$indi <-
dt_table_out_indi(tab1$indi_table, table_options_new_1)
for_report$indi
})
waitress$close()
})
#
observeEvent(input$run_tab1, # modal or median cut score output
{
output$group_median <-
DT::renderDT({
for_report$med <-
dt_table_out_med(tab1$median_table, table_options_new_2)
for_report$med
})
})
observeEvent(input$run_tab1, # modal or median cut score output
{
output$group_mode <-
DT::renderDT({
for_report$mode <-
dt_table_out_mode(tab1$modal_table, table_options_new_2)
for_report$mode
})
})
# Detailed ESS Group Results
#-----------------------------------------------------------------------
## Generate TAB & output panels inside generated Tabs
#------------------------------------------------------------------------
observeEvent(input$run_tab1,
{
modal_selected_cp <- tab1$modal_selected_cp_all
n.of.gca <- information$data_ready$id_list$GCA
n.of.tb <- rep(1, length(n.of.gca))
test_nm <- n.of.gca
target_loc <- information$base_data$loc_nm
target_filter <- information$base_data$target_nm
# Tab generation + putting uiOutput
TAB <-
do.call(
tabsetPanel,
c(id ='tab',lapply(1:length(n.of.gca), function(i) {
tabPanel(
title = paste0('GCA: ', test_nm[i]),
uiOutput(paste0('out',i))
)
})
)
)
output$tabs <- renderUI({ TAB })
# Place Output for each tab
v <- vector("list", length(n.of.gca))
for(vi in 1:length(n.of.gca)) {
in_num <- n.of.tb[vi]
for(vvi in 1:in_num){
txt_outname <- paste("txt", vi, vvi, sep = "_")
t_outname <- paste("t1", vi, vvi, sep = "_")
eff_outname <- paste("eff1", vi, vvi, sep = "_")
p_outname <- paste("p1", vi, vvi, sep = "_")
ct_outname <- paste("ct", vi, vvi, sep = "_")
cutpoints <- paste(modal_selected_cp[vi][[vvi]], collapse = ",")
v[[vi]][[vvi]] <-
fluidRow(
column(width = 5, align = 'left',
textInput(txt_outname, "Minimum point",
value = cutpoints),
htmlOutput(eff_outname),
htmlOutput(t_outname)
),
column(width = 7, align = 'right',
htmlOutput(ct_outname),
plotOutput(p_outname, width = "90%", height = "550px")
)
)
}
}
## Generate outputs inside each uioutput
lapply(1:length(n.of.gca), function(vi) {
ui_outname <- paste0("out", vi)
output[[ui_outname]] <-
renderUI({
in_num <- n.of.tb[vi]
lapply(1:in_num, function(vvi){
v[[vi]][[vvi]]
})
})
})
})
## Obtain Data for Display (Cut Scores) #
#------------------------------------------------------------------------
# tab2 <- reactiveValues()
# observeEvent(input$run_tab1,
# {
# res@tab2$for_tab2_out <- gen_tab2(tab1, information)$for_tab2_out
# })
# Update
observeEvent(input$update,
{
n.of.gca <- information$data_ready$id_list$GCA
n.of.tb <- rep(1, length(n.of.gca))
manual_cp <-
lapply(1:length(n.of.gca), function(vi) {
# vi = 1 ; vvi = 1
in_num <- n.of.tb[vi]
unlist(
lapply(1:in_num, function(vvi) {
txt_outname <- paste("txt", vi, vvi, sep = "_")
cutpo <- input[[txt_outname]]
cutpoint_inp <- as.numeric(str_split(cutpo, ",")[[1]])
})
)
})
updates <- updateESS(
ess_class = ess$res,
manual_cp = list(c(2,7,10))
)
res$updates <- updates
information <- updates@information
tab0 <- updates@tab0
tab1 <- updates@tab1
tab2 <- updates@tab2
tab3 <- updates@tab3
tab4 <- updates@tab4
})
## Output for Detailed ESS Group Results
#------------------------------------------------------------------------
observeEvent(input$run_tab1,
{
loc_nm <- information$base_data$loc_nm
WESS_nm <- information$base_data$WESS
n.of.gca <- information$data_ready$id_list$GCA
n.of.tb <- rep(1, length(n.of.gca))
for_tab2_out <- tab2$for_tab2_out
# put the results into each output
lapply(1:length(n.of.gca), function(vi) {
# vi = 1; vvi = 1
in_num <- n.of.tb[vi]
lapply(1:in_num, function(vvi) {
t_outname <- paste("t1", vi, vvi, sep = "_")
eff_outname <- paste("eff1", vi, vvi, sep = "_")
p_outname <- paste("p1", vi, vvi, sep = "_")
ct_outname <- paste("ct", vi, vvi, sep = "_")
output[[t_outname]] <- renderText( {
dataUse_1 <- for_tab2_out[[vi]][[vvi]][["t_out"]]
tab2_table(dataUse_1, information$base_data$WESS)
})
output[[eff_outname]] <-
renderText({
eff_data <- for_tab2_out[[vi]][[vvi]][["eff_data"]]
tab2_table_effpage(eff_data)
})
output[[p_outname]] <- renderPlot( {
for_tab2_out[[vi]][[vvi]][["p1"]]
})
output[[ct_outname]] <- renderText({
crosstabs <- for_tab2_out[[vi]][[vvi]][["crosst"]]
tab2_table_crosst(crosstabs)
})
})
})
})
observeEvent(input$update,
{
loc_nm <- information$base_data$loc_nm
WESS_nm <- information$base_data$WESS_nm
n.of.gca <- information$data_ready$id_list$GCA
n.of.tb <- rep(1, length(n.of.gca))
for_tab2_out <- tab2$for_tab2_out
# put the results into each output
lapply(1:length(n.of.gca), function(vi) {
# vi = 1; vvi = 1
in_num <- n.of.tb[vi]
lapply(1:in_num, function(vvi) {
t_outname <- paste("t1", vi, vvi, sep = "_")
eff_outname <- paste("eff1", vi, vvi, sep = "_")
p_outname <- paste("p1", vi, vvi, sep = "_")
ct_outname <- paste("ct", vi, vvi, sep = "_")
dataUse_1 <- for_tab2_out[[vi]][[vvi]][["t_out"]]
crosstabs <- for_tab2_out[[vi]][[vvi]][["crosst"]]
p1 <- for_tab2_out[[vi]][[vvi]][["p1"]]
output[[t_outname]] <- renderText( {
tab2_table(dataUse_1,information$base_data$WESS_nm)
})
output[[eff_outname]] <-
renderText({
# vi = 1; vvi = 1
efft_data <-
for_tab2_out[[vi]][[vvi]][["eff_data"]] %>%
select(-ends_with("_p")) %>%
mutate(
Table = if_else(Table == 0, "All", as.character(Table)),
Correlation = round(Correlation, 3)
)
tab2_table_effpage(efft_data)
})
output[[p_outname]] <- renderPlot( {
p1
})
output[[ct_outname]] <- renderText({
ct_1 <- crosstabs
num_level <- ncol(ct_1)
as.data.frame.matrix(ct_1) %>%
mutate(".." := rownames(.),
.before = 1) %>%
mutate("." := "Operational Level",
.before = 1) %>%
kable() %>%
kable_styling(
c("striped"),
full_width = F,
font_size = 14
) %>%
column_spec(
1,
bold = T,
width="3em",extra_css="transform: rotate(-90deg);"
) %>%
collapse_rows(., columns = 1, valign = "middle") %>%
add_header_above( c(" " = 2, "Aligned_ALD" = num_level ))
})
})
})
})
#
# Cut Score Summary
#-----------------------------------------------------------------
## Summary of Cut Scores and impact data
#-----------------------------------------------------------------
## Summary of Cut Scores and impact data Display #
#------------------------------------------------------------
observeEvent(input$run_tab1, {
output$pagetb <-
renderText({
tab3_table_pagetb(tab3)
})
})
observeEvent(input$run_tab1,
{
tab3_plots <- tab3_plots(tab3)
output$pagePlot1 <- renderPlot({
tab3_plots$p_page1
})
output$pagePlot2 <- renderPlot({
tab3_plots$p_page2
})
output$pagePlot3 <- renderPlot({
tab3_plots$p_page3
})
})
# Update --------------------------------------
#----------------------------------------------
# observeEvent(input$update,
# {
# target_filter <- information$base_data$target_nm
# target_loc <- information$base_data$loc_nm
# gca_nm <- information$data_ready$id_list$GCA
#
# setup_data <- information$imported_data$setup_data
# examinee_data <-
# information$imported_data$examinee_data
#
# gca_p <-
# which(upper_remove_blank(names(examinee_data)) ==
# upper_remove_blank("grade")|
# upper_remove_blank(names(examinee_data)) ==
# upper_remove_blank("gca"))
#
# examinee_data <-
# examinee_data %>%
# filter(GCA %in% gca_nm) %>%
# group_split(!!as.name(names(examinee_data)[gca_p])) %>%
# set_names(., nm = gca_nm)
#
# item_data <-
# information$imported_data$item_data %>%
# filter(GCA %in% gca_nm) %>%
# group_split(GCA) %>%
# set_names(., nm = gca_nm)
#
# num_item <- map(item_data, nrow)
# loc_num <- map(item_data, ~ .x %>% select(all_of(target_loc)))
#
# if(information$base_data$modal_nm == "modal") {
# dataUse_0 <- tab1$modal_res_all
#
# data_name <- names(dataUse_0)
# page_name <- data_name[str_detect(data_name, "_p")]
# loc_name <- data_name[str_detect(data_name, "_loc")]
# level_names <- paste0("Level", 1:(length(page_name)+1))
# cut_data <- dataUse_0 %>% select(matches("_p|_loc"))
#
# dataUse_0 <- dataUse_0 %>% mutate_at(page_name, ceiling)
# } else {
# dataUse_0 <- tab1$median_res_all
#
# data_name <- names(dataUse_0)
# page_name <- data_name[str_detect(data_name, "_p")]
# loc_name <- data_name[str_detect(data_name, "_loc")]
# level_names <- paste0("Level", 1:(length(page_name)+1))
# cut_data <- dataUse_0 %>% select(matches("_p|_loc"))
#
# dataUse_0 <- dataUse_0 %>% mutate_at(page_name, ceiling)
# }
#
# tab3$page_data <-
# map(1:nrow(dataUse_0), gen_page_data,
# dataUse_0, item_data, examinee_data, page_name,
# target_loc, level_names)
#
# tab3$scale_scores <- map(tab3$page_data, ~ .x$scale_scores) %>% bind_rows()
# tab3$perc_ins <- map(tab3$page_data, ~ .x$perc_ins) %>% bind_rows()
# tab3$perc_atabos <- map(tab3$page_data, ~ .x$perc_atabos) %>% bind_rows()
# tab3$perc_bel <- map(tab3$page_data, ~ .x$perc_bel) %>% bind_rows()
#
# tab3$perc_ins <-
# tab3$perc_ins %>% mutate(perIn_c = paste0(percIn, "%"))
# tab3$perc_atabos <-
# tab3$perc_atabos %>% mutate(percAtabo_c = paste0(percAtabo, "%"))
# tab3$perc_bel <-
# tab3$perc_bel %>% mutate(percBel_c = paste0(percBel, "%"))
#
# blank_page <-
# map(gca_nm, gen_blank_page, information$data_ready$level_nm[[1]])
# perIn <- tab3$perc_ins %>% group_split(GCA)
# percAtabv <- tab3$perc_atabos %>% group_split(GCA)
# percBel <- tab3$perc_bel %>% group_split(GCA)
#
# min_data <- cut_data %>% select(ends_with("_p"))
#
# tab3$eff_page <-
# map(1:length(blank_page), summarize_page,
# blank_page, perIn, percAtabv, percBel, min_data, level_names, num_item,
# loc_num) %>%
# bind_rows(.)
# })
#
# ## Summary of Cut Scores and impact data Display #
# #------------------------------------------------------------
# observeEvent(input$update, {
# output$pagetb <-
# renderText({
# page_data <- tab3$eff_page %>% data.frame()
#
# forline <- page_data %>% pull(1) %>% unique() %>% length()
# kable.line <- 1:forline
# for(fl in 1:forline){
# kable.line[fl] <- 5*fl + 0
# }
#
# for_report$effpage <-
# page_data %>%
# kable(.,"html", escape = F, align = "c",
# table.attr = "style='width:50%;'") %>%
# kable_styling(bootstrap_options = c("striped"),
# # full_width = F,
# position = "left",
# font_size = 18,
# fixed_thead = T) %>%
# row_spec(1:nrow(page_data), color = "black") %>%
# row_spec(0, angle = 0,
# background = "floralwhite",
# extra_css = "border-bottom: 1px solid") %>%
# collapse_rows(columns = 1:2, valign = "top") %>%
# row_spec(., kable.line, extra_css = "border-bottom: 1px solid")
#
# for_report$effpage
#
# })
# })
#
# observeEvent(input$update,
# {
# output$pagePlot1 <- renderPlot({
#
# tab3$p_page1 <-
# tab3$scale_scores %>%
# ggplot() +
# geom_line(aes(x = GCA, y = scaleScore,
# colour = Level, group = Level),size = 2) +
# geom_text(aes(label = scaleScore,
# x = GCA, y = scaleScore, group = Level), size = 6,
# vjust = 1) +
# labs(title = "Scale Score Cut Scores",
# y = "Scale Score Cut Scores") +
# theme_bw(base_size = 20) +
# scale_color_brewer(palette="Paired")
#
# tab3$p_page1
# })
# output$pagePlot2 <- renderPlot({
#
# tab3$p_page2 <-
# tab3$perc_ins %>%
# mutate(Level = factor(Level),
# Level = factor(Level, levels = rev(levels(Level)))
# ) %>%
# ggplot() +
# geom_col(aes(x = GCA, y = percIn, fill = Level)) +
# geom_text(aes(label = percIn,
# x = GCA, y = percIn, group = Level),
# size = 6,
# position = position_stack(vjust = .5)) +
# labs(title = "Percentage in Level",
# y = "Percentage in Level") +
# theme_bw(base_size = 20) +
# scale_fill_brewer(palette="Paired")
#
# tab3$p_page2
# })
# output$pagePlot3 <- renderPlot({
#
# tab3$p_page3 <-
# tab3$perc_atabos %>%
# ggplot() +
# geom_line(
# aes(x = GCA, y = percAtabo, colour = Level, group = Level),
# size = 1.5) +
# geom_text(aes(label = percAtabo,
# x = GCA, y = percAtabo, group = Level), size = 6,
# vjust = 1) +
#
# labs(title = "Percentage At or Above Cut Score",
# y = "Percentage At or Above Cut Score") +
# theme_bw(base_size = 20) +
# scale_color_brewer(palette="Paired")
#
# tab3$p_page3
# })
# })
# #
# Item Review ---------------------------------------------------
#----------------------------------------------------------------
## Item Review Ready
#----------------------------------------------------------------
## Item Review Display
#----------------------------------------------------------------
observeEvent(input$run_tab1,
{
output$review <-
DT::renderDataTable({
for_report$ireview <- tab4_table_review(tab4)
for_report$ireview
})
})
# Item Review Update
#----------------------------------------------------------------
## Item Review Ready
#----------------------------------------------------------------
# observeEvent(input$update,
# {
# n.of.gca <- information$data_ready$id_list$GCA
# n.of.tb <- rep(1, length(n.of.gca))
#
# loc_nm <- information$base_data$loc_nm
#
# for_tab2_out <- tab2$for_tab2_out
#
# level_names <- names(tab3$eff_page)[-c(1:3)]
#
# SD <- information$data_ready$SD_data
#
# cs_inf <-
# tab1$modal_res_all %>%
# select(GCA, ends_with("_loc")) %>%
# set_names(., nm = c("GCA", level_names)) %>%
# gather(., "ALD", "Cut_Score", -GCA)
#
# item_review_table <-
# foreach(vi = 1:length(n.of.gca), .combine = 'rbind') %do% {
# # vi = 2
#
# cutpoint_inp <- tab1$modal_selected_cp_all[[vi]]
#
# dataUse_1 <- for_tab2_out[[vi]][[1]][["t_out"]]
#
# dataUse_Weight <-
# dataUse_1 %>%
# mutate(
# weightSum = dplyr::select(., ends_with("_W")) %>%
# rowSums()
# ) %>% pull(weightSum)
#
# target_names <- dataUse_1$ALD
#
# lv_name <- target_names %>% unique() %>% sort()
# #
# given_n <- c(1:length(lv_name))
# targets_n <- match(target_names, lv_name)
# ## dataUse_1["ALD"]
# er <- length(target_names)
# review_table <-
# foreach(n = 2:(length(given_n)), .combine = 'rbind') %do% {
# # n = 2
# cr <- cutpoint_inp[(n-1)]
# # cr = 3
# cr_abo <- cr
# cr_bel <- cr
#
# c_bel <- which(targets_n[0:(cr - 1)] >= n)
# c_abo <- (which(targets_n[cr_abo:er] < n) - 1) + cr_abo
#
# dataUse_1[c(c_bel, c_abo), ]
# }
# all_names <- names(review_table)
# review_table <- review_table %>% distinct(!!!syms(all_names))
# review_table <-
# review_table %>%
# select(-Round) %>%
# mutate(.,
# Weight = dplyr::select(., ends_with("_W")) %>%
# rowSums()
# )
# }
#
# cs_inf_upper <-
# cs_inf %>%
# mutate(
# ALD = extract_num(ALD),
# ALD = paste0("Level", (ALD - 1))
# ) %>%
# rename(
# "Cut_Score_upper" = "Cut_Score"
# )
#
# item_review_table <-
# item_review_table %>%
# left_join(., cs_inf, by = c("GCA" = "GCA",
# "ALD" = "ALD")) %>%
# left_join(., cs_inf_upper, by = c("GCA" = "GCA",
# "ALD" = "ALD")) %>%
# left_join(., SD, by = c("GCA" = "GCAid")) %>%
#
# mutate(AN = extract_num(ALD),
# ON = extract_num(Operational_Lv),
# Diff_LV = AN - ON,
# Distance = case_when(
# AN > ON ~ !!as.name(loc_nm) - Cut_Score,
# AN < ON ~ !!as.name(loc_nm) - (Cut_Score_upper - 1)
# ),
# `Std. Distance` = round(Distance / SD, 3)
# ) %>%
#
# select(-matches("L[[:digit:]]+"), -AN, -ON) %>%
# select(
# GCA, Item_ID, OOD,
# ALD, Operational_Lv, Diff_LV,
# starts_with("Loc"),
# Distance,`Std. Distance`) %>%
# rename(
# "Aligned_ALD" = "ALD"
# ) %>%
# arrange(
# GCA, Item_ID
# )
#
# tab4$for_tab4_out <- item_review_table
# })
#
# ## Item Review Display
# #----------------------------------------------------------------
# observeEvent(input$update,
# {
# output$review <-
# DT::renderDataTable({
#
# maxRow <- nrow(tab4$for_tab4_out)
# grades <- tab4$for_tab4_out %>% pull(1) %>% unique()
# colors <- c('#DAF7A6',"#A6B1F7","#A6F7C3","#A6DAF7","#FFC300")
#
# tab4_out <-
# tab4$for_tab4_out
#
# for_report$ireview <-
# DT::datatable(tab4_out,
# rownames = F,
# options = table_options_new_2(maxRow)
# ) %>%
# formatStyle(1,
# backgroundColor = styleEqual(grades,colors[1:length(grades)])
# )
#
# for_report$ireview
# })
# })
#
# Report
#------------------------------------------------------------------------
reportTables <- reactiveValues()
observeEvent(input$run_tab4,
{
setup_data <-
information$imported_data$setup_data %>%
set_names(nm = c("GCA","Content Area", "Grade","Table per Room","Level Options", "SD"))
setup_data <-
classAppend(setup_data, "inpdata")
reportTables$setup <- mytable(setup_data, "Table 1. Grades, Content Areas, Numbers and Names of Levels")
panel_data <-
classAppend(information$data_ready$id_list$PanelID, "inpdata")
reportTables$panel <- mytable(panel_data, "Table 2. Panelists and Configuration")
indi_table <- tab1$indi_table %>% rename("Cors" = "Correlation")
indi_table <- classAppend(indi_table, "ESSresult1")
reportTables$indi <-
mytable(indi_table, "Table 3. Inidividual ESS")
modal_table <- tab1$modal_table %>% rename("Cors" = "Correlation")
modal_table <- classAppend(modal_table, "ESSresult1")
reportTables$modal <- mytable(modal_table, "Table 4. Modal ESS")
median_table <- classAppend(tab1$median_table, "ESSresult2")
reportTables$med <- mytable(median_table, "Table 5. Median ESS")
for(i in 1:length(tab2$for_tab2_out)){
# i <- 1
f_tab_gen <- tab2$for_tab2_out[[i]][[1]][["t_out"]]
f_tab_gen <- classAppend(f_tab_gen, "detailESS")
f_tab_gen <- mytable(f_tab_gen, paste0("Table 6-",i,". Detailed ESS"))
reportTables[[paste0("detailESS_",i)]] <- f_tab_gen
}
for(i in 1:length(tab2$for_tab2_out)){
# i <- 1
crosstabs <- tab2$for_tab2_out[[i]][[1]][["crosst"]]
crosstabs <- classAppend(crosstabs, "crosst")
crosstabs <- mytable(crosstabs, paste0("Table 7-",i,". Crosstabs"))
reportTables[[paste0("crosst_",i)]] <- crosstabs
}
eff_page <- classAppend(tab3$eff_page, "effpage")
reportTables$effpage<-mytable(eff_page, "Table 8. Cut Page")
item_review <- classAppend(tab4$for_tab4_out, "review")
reportTables$ireview <- mytable(item_review, "Table 9. Item Review")
})
observe({
req(reportTables$ireview)
show_alert(
title = "Report Ready",
text = "Press Download",
type = "success"
)
})
output$report <- downloadHandler(
filename = function() {
paste("Report_",Sys.Date(), ".docx", sep = "")
},
content = function(file) {
shiny::withProgress(
message = paste0("Downloading", " the document"),
value = 0,
{
file_docx <- tempfile(fileext = ".docx")
for_tab2_out <- tab2$for_tab2_out
shiny::incProgress(1/10)
Sys.sleep(1)
shiny::incProgress(5/10)
word_out3(file_docx, reportTables = reportTables,
for_tab2_out = for_tab2_out, tab3 = tab3)
Sys.sleep(1)
shiny::incProgress(4/10)
Sys.sleep(1)
file.rename( from = file_docx, to = file )
}
)
}
)
# Validity Tab
#-------------------------------------------------------------------
val_data <-
reactive({
read_excel(input$val_data$datapath)
})
observeEvent(input$val_import,
{
SD_data <- information$data_ready$SD_data
val_data <- val_data()
cut_score <-
map(tab3$page_data, ~ .[["scale_scores"]]) %>%
bind_rows() %>%
left_join(., SD_data, by = c("GCA" = "GCAid"))
val_table <-
tibble(
GCA = val_data$GCA,
Level = cut_score$Level,
Existing_Cut_score = val_data$`Cut Score`,
ESS_Cut_score =cut_score$scaleScore,
Difference = Existing_Cut_score - ESS_Cut_score,
SD = cut_score$SD,
Std_Diff = round(Difference/SD,2)
)
output$valid <-
DT::renderDataTable({
DT::datatable(val_table)
})
})
})#shinySever
##############################################################
sooyongl/ESS documentation built on Dec. 23, 2021, 4:22 a.m.
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rm(list = ls())
# Input Setting -----------------------------------------
root <- rprojroot::find_rstudio_root_file()
data_path <- file.path(root, "test/data")
source_path <- file.path(root, "test/original")
source(file.path("shiny", "global.R"))
input <- list()
# input$tests <- c("M4","R5")
input$tests <- c("M3")
input$targets <- "ALD"#
input$WESS = F
input$threshold = T
input$median = "modal"
path <- fs::dir_ls(data_path)[1]
input$loc <- "Loc_RP67"
# shinyServer(function(input, output, session) {
# shiny APP -----------------------------------------
# Data Import
#--------------------------------------------------------------
# imprt_data <- #reactive({
# path <- input$setups$datapath
imprt_data <- read_data(path)
#return(temp)
# })
data_list <- data_ready(imprt_data)
setup_data <- data_list[["setup_data"]]
rating_data <- data_list[["rating_data"]]
item_data <- data_list[["item_data"]]
examinee_data <- data_list[["examinee_data"]]
#
#
# observeEvent(input$import, {
# output$setting <- renderTable({
# imprt_data[[1]]},
# striped = T,
# align = "c",
# width = '70%',
# caption = "Setup",
# caption.placement = getOption("xtable.caption.placement", "top")
# )
# })
# #
# observeEvent(input$import, {
# output$itemtable1 <- renderTable({
#
# data_name <- names(imprt_data()[[3]])
#
# imprt_data()[[3]] %>%
# set_names(nm = c("GCA","Subject","Grade","Round","Table","Panelist","Item_ID","ALD")) %>%
# group_by(GCA, Subject, Grade, Round, Panelist) %>%
# summarise(
# `Number of Item` = n()
# )
# },
# striped = T,
# align = "c",
# width = '50%',
# caption = "Number of Items on Rating",
# caption.placement = getOption("xtable.caption.placement", "top")
# )
# })
#
# observeEvent(input$import, {
# output$itemtable2 <- renderTable({
#
# imprt_data()[[4]] %>%
# group_by(GCA) %>%
# summarise(
# `Number of Item` = n()
# )
# },
# striped = T,
# align = "c",
# width = '30%',
# caption = "Number of Items on Item Meta Data",
# caption.placement = getOption("xtable.caption.placement", "top")
# )
# })
#
# observeEvent(input$import, {
# output$text1 <- renderText({
#
# data_name <- names(imprt_data()[[3]])
#
# rating <- imprt_data()[[3]] %>%
# select(1:8) %>%
# set_names(nm = c("GCA","Subject","Grade","Round","Table","Panelist","Item_ID","ALD")) %>%
# group_by(GCA, Subject, Grade, Round, Panelist) %>%
# summarise(
# `Number of Item` = n()
# )
#
# item_data <- imprt_data()[[4]] %>%
# group_by(GCA) %>%
# summarise(
# `Number of Item` = n()
# )
#
# a1 <- rating$`Number of Item`
# a2 <- item_data$`Number of Item`
# a3 <- which((a1 - a2) != 0)
# a4 <- paste0(rating$GCA[a3], collapse = ", ")
#
# if(length(a3) == 0) {
#
# glue::glue("")
# } else {
#
# glue::glue("WARNING: Inconsistent length of items in {a4}")
#
# }
# })
# })
# Input-Information-Ready
#--------------------------------------------------------------
# observeEvent(input$import, {
# id_selected_choices <- pull_unique(setup_data(), 1)
# loc_selected_choices <-
# item_data() %>%
# select(
# which(str_detect(toupper(names(.)), toupper("loc")))
# ) %>%
# names(.)
#
# loc_selected_choices <-
# loc_selected_choices[str_detect(toupper(loc_selected_choices), toupper("Loc"))]
#
# if(sum(str_detect(loc_selected_choices, "67")) != 1){
# selected_choices <- loc_selected_choices[1]
# } else {
# selected_choices <-
# loc_selected_choices[str_detect(loc_selected_choices, "67")]
# }
#
# updateCheckboxGroupInput(
# session,
# inputId = "tests",
# label = NULL,
# choices = id_selected_choices,
# selected = id_selected_choices,
# inline = T
# )
#
# updateRadioButtons(
# session,
# inputId = "loc",
# label = NULL,
# choices = loc_selected_choices,
# selected = selected_choices,
# inline = T
# )
# })
# Data Filtering
#---------------------------------------------------------------------------
# filtered_data <-
# eventReactive(input$tests, {
# req(rating_data())
# filtered_data <- data_filter(rating_data(), input$tests)
# return(filtered_data)
# })
# Information Data Ready
#---------------------------------------------------------------------------
# Calculate Cut Scores
#---------------------------------------------------------------------------
waitress <- Waitress$new("#run_tab1", theme = "overlay", infinite = TRUE)
res <- reactiveValues()
information <- reactiveValues()
tab0 <- reactiveValues()
tab1 <- reactiveValues()
tab2 <- reactiveValues()
tab3 <- reactiveValues()
tab4 <- reactiveValues()
observeEvent(input$run_tab1, # Estimate Cut Score and Cut Point
{
waitress$start()
res$ess <- runESS(
data_list,
grade = input$tests,
ald = input$ald,
location = input$loc,
WESS = input$WESS,
modal = F,
threshold = F
)
information <- ess@information
tab0 <- ess@tab0
tab1 <- ess@tab1
tab2 <- ess@tab2
tab3 <- ess@tab3
tab4 <- ess@tab4
})
#
# Individual Cut Scores
#
for_report <- reactiveValues()
observeEvent(input$run_tab1, # For Individual Table output
{
output$indi <-
DT::renderDT({
for_report$indi <-
dt_table_out_indi(tab1$indi_table, table_options_new_1)
for_report$indi
})
waitress$close()
})
#
observeEvent(input$run_tab1, # modal or median cut score output
{
output$group_median <-
DT::renderDT({
for_report$med <-
dt_table_out_med(tab1$median_table, table_options_new_2)
for_report$med
})
})
observeEvent(input$run_tab1, # modal or median cut score output
{
output$group_mode <-
DT::renderDT({
for_report$mode <-
dt_table_out_mode(tab1$modal_table, table_options_new_2)
for_report$mode
})
})
# Detailed ESS Group Results
#-----------------------------------------------------------------------
## Generate TAB & output panels inside generated Tabs
#------------------------------------------------------------------------
observeEvent(input$run_tab1,
{
modal_selected_cp <- tab1$modal_selected_cp_all
n.of.gca <- information$data_ready$id_list$GCA
n.of.tb <- rep(1, length(n.of.gca))
test_nm <- n.of.gca
target_loc <- information$base_data$loc_nm
target_filter <- information$base_data$target_nm
# Tab generation + putting uiOutput
TAB <-
do.call(
tabsetPanel,
c(id ='tab',lapply(1:length(n.of.gca), function(i) {
tabPanel(
title = paste0('GCA: ', test_nm[i]),
uiOutput(paste0('out',i))
)
})
)
)
output$tabs <- renderUI({ TAB })
# Place Output for each tab
v <- vector("list", length(n.of.gca))
for(vi in 1:length(n.of.gca)) {
in_num <- n.of.tb[vi]
for(vvi in 1:in_num){
txt_outname <- paste("txt", vi, vvi, sep = "_")
t_outname <- paste("t1", vi, vvi, sep = "_")
eff_outname <- paste("eff1", vi, vvi, sep = "_")
p_outname <- paste("p1", vi, vvi, sep = "_")
ct_outname <- paste("ct", vi, vvi, sep = "_")
cutpoints <- paste(modal_selected_cp[vi][[vvi]], collapse = ",")
v[[vi]][[vvi]] <-
fluidRow(
column(width = 5, align = 'left',
textInput(txt_outname, "Minimum point",
value = cutpoints),
htmlOutput(eff_outname),
htmlOutput(t_outname)
),
column(width = 7, align = 'right',
htmlOutput(ct_outname),
plotOutput(p_outname, width = "90%", height = "550px")
)
)
}
}
## Generate outputs inside each uioutput
lapply(1:length(n.of.gca), function(vi) {
ui_outname <- paste0("out", vi)
output[[ui_outname]] <-
renderUI({
in_num <- n.of.tb[vi]
lapply(1:in_num, function(vvi){
v[[vi]][[vvi]]
})
})
})
})
## Obtain Data for Display (Cut Scores) #
#------------------------------------------------------------------------
# tab2 <- reactiveValues()
# observeEvent(input$run_tab1,
# {
# res@tab2$for_tab2_out <- gen_tab2(tab1, information)$for_tab2_out
# })
# Update
observeEvent(input$update,
{
n.of.gca <- information$data_ready$id_list$GCA
n.of.tb <- rep(1, length(n.of.gca))
manual_cp <-
lapply(1:length(n.of.gca), function(vi) {
# vi = 1 ; vvi = 1
in_num <- n.of.tb[vi]
unlist(
lapply(1:in_num, function(vvi) {
txt_outname <- paste("txt", vi, vvi, sep = "_")
cutpo <- input[[txt_outname]]
cutpoint_inp <- as.numeric(str_split(cutpo, ",")[[1]])
})
)
})
updates <- updateESS(
ess_class = ess$res,
manual_cp = list(c(2,7,10))
)
res$updates <- updates
information <- updates@information
tab0 <- updates@tab0
tab1 <- updates@tab1
tab2 <- updates@tab2
tab3 <- updates@tab3
tab4 <- updates@tab4
})
## Output for Detailed ESS Group Results
#------------------------------------------------------------------------
observeEvent(input$run_tab1,
{
loc_nm <- information$base_data$loc_nm
WESS_nm <- information$base_data$WESS
n.of.gca <- information$data_ready$id_list$GCA
n.of.tb <- rep(1, length(n.of.gca))
for_tab2_out <- tab2$for_tab2_out
# put the results into each output
lapply(1:length(n.of.gca), function(vi) {
# vi = 1; vvi = 1
in_num <- n.of.tb[vi]
lapply(1:in_num, function(vvi) {
t_outname <- paste("t1", vi, vvi, sep = "_")
eff_outname <- paste("eff1", vi, vvi, sep = "_")
p_outname <- paste("p1", vi, vvi, sep = "_")
ct_outname <- paste("ct", vi, vvi, sep = "_")
output[[t_outname]] <- renderText( {
dataUse_1 <- for_tab2_out[[vi]][[vvi]][["t_out"]]
tab2_table(dataUse_1, information$base_data$WESS)
})
output[[eff_outname]] <-
renderText({
eff_data <- for_tab2_out[[vi]][[vvi]][["eff_data"]]
tab2_table_effpage(eff_data)
})
output[[p_outname]] <- renderPlot( {
for_tab2_out[[vi]][[vvi]][["p1"]]
})
output[[ct_outname]] <- renderText({
crosstabs <- for_tab2_out[[vi]][[vvi]][["crosst"]]
tab2_table_crosst(crosstabs)
})
})
})
})
observeEvent(input$update,
{
loc_nm <- information$base_data$loc_nm
WESS_nm <- information$base_data$WESS_nm
n.of.gca <- information$data_ready$id_list$GCA
n.of.tb <- rep(1, length(n.of.gca))
for_tab2_out <- tab2$for_tab2_out
# put the results into each output
lapply(1:length(n.of.gca), function(vi) {
# vi = 1; vvi = 1
in_num <- n.of.tb[vi]
lapply(1:in_num, function(vvi) {
t_outname <- paste("t1", vi, vvi, sep = "_")
eff_outname <- paste("eff1", vi, vvi, sep = "_")
p_outname <- paste("p1", vi, vvi, sep = "_")
ct_outname <- paste("ct", vi, vvi, sep = "_")
dataUse_1 <- for_tab2_out[[vi]][[vvi]][["t_out"]]
crosstabs <- for_tab2_out[[vi]][[vvi]][["crosst"]]
p1 <- for_tab2_out[[vi]][[vvi]][["p1"]]
output[[t_outname]] <- renderText( {
tab2_table(dataUse_1,information$base_data$WESS_nm)
})
output[[eff_outname]] <-
renderText({
# vi = 1; vvi = 1
efft_data <-
for_tab2_out[[vi]][[vvi]][["eff_data"]] %>%
select(-ends_with("_p")) %>%
mutate(
Table = if_else(Table == 0, "All", as.character(Table)),
Correlation = round(Correlation, 3)
)
tab2_table_effpage(efft_data)
})
output[[p_outname]] <- renderPlot( {
p1
})
output[[ct_outname]] <- renderText({
ct_1 <- crosstabs
num_level <- ncol(ct_1)
as.data.frame.matrix(ct_1) %>%
mutate(".." := rownames(.),
.before = 1) %>%
mutate("." := "Operational Level",
.before = 1) %>%
kable() %>%
kable_styling(
c("striped"),
full_width = F,
font_size = 14
) %>%
column_spec(
1,
bold = T,
width="3em",extra_css="transform: rotate(-90deg);"
) %>%
collapse_rows(., columns = 1, valign = "middle") %>%
add_header_above( c(" " = 2, "Aligned_ALD" = num_level ))
})
})
})
})
#
# Cut Score Summary
#-----------------------------------------------------------------
## Summary of Cut Scores and impact data
#-----------------------------------------------------------------
## Summary of Cut Scores and impact data Display #
#------------------------------------------------------------
observeEvent(input$run_tab1, {
output$pagetb <-
renderText({
tab3_table_pagetb(tab3)
})
})
observeEvent(input$run_tab1,
{
tab3_plots <- tab3_plots(tab3)
output$pagePlot1 <- renderPlot({
tab3_plots$p_page1
})
output$pagePlot2 <- renderPlot({
tab3_plots$p_page2
})
output$pagePlot3 <- renderPlot({
tab3_plots$p_page3
})
})
# Update --------------------------------------
#----------------------------------------------
# observeEvent(input$update,
# {
# target_filter <- information$base_data$target_nm
# target_loc <- information$base_data$loc_nm
# gca_nm <- information$data_ready$id_list$GCA
#
# setup_data <- information$imported_data$setup_data
# examinee_data <-
# information$imported_data$examinee_data
#
# gca_p <-
# which(upper_remove_blank(names(examinee_data)) ==
# upper_remove_blank("grade")|
# upper_remove_blank(names(examinee_data)) ==
# upper_remove_blank("gca"))
#
# examinee_data <-
# examinee_data %>%
# filter(GCA %in% gca_nm) %>%
# group_split(!!as.name(names(examinee_data)[gca_p])) %>%
# set_names(., nm = gca_nm)
#
# item_data <-
# information$imported_data$item_data %>%
# filter(GCA %in% gca_nm) %>%
# group_split(GCA) %>%
# set_names(., nm = gca_nm)
#
# num_item <- map(item_data, nrow)
# loc_num <- map(item_data, ~ .x %>% select(all_of(target_loc)))
#
# if(information$base_data$modal_nm == "modal") {
# dataUse_0 <- tab1$modal_res_all
#
# data_name <- names(dataUse_0)
# page_name <- data_name[str_detect(data_name, "_p")]
# loc_name <- data_name[str_detect(data_name, "_loc")]
# level_names <- paste0("Level", 1:(length(page_name)+1))
# cut_data <- dataUse_0 %>% select(matches("_p|_loc"))
#
# dataUse_0 <- dataUse_0 %>% mutate_at(page_name, ceiling)
# } else {
# dataUse_0 <- tab1$median_res_all
#
# data_name <- names(dataUse_0)
# page_name <- data_name[str_detect(data_name, "_p")]
# loc_name <- data_name[str_detect(data_name, "_loc")]
# level_names <- paste0("Level", 1:(length(page_name)+1))
# cut_data <- dataUse_0 %>% select(matches("_p|_loc"))
#
# dataUse_0 <- dataUse_0 %>% mutate_at(page_name, ceiling)
# }
#
# tab3$page_data <-
# map(1:nrow(dataUse_0), gen_page_data,
# dataUse_0, item_data, examinee_data, page_name,
# target_loc, level_names)
#
# tab3$scale_scores <- map(tab3$page_data, ~ .x$scale_scores) %>% bind_rows()
# tab3$perc_ins <- map(tab3$page_data, ~ .x$perc_ins) %>% bind_rows()
# tab3$perc_atabos <- map(tab3$page_data, ~ .x$perc_atabos) %>% bind_rows()
# tab3$perc_bel <- map(tab3$page_data, ~ .x$perc_bel) %>% bind_rows()
#
# tab3$perc_ins <-
# tab3$perc_ins %>% mutate(perIn_c = paste0(percIn, "%"))
# tab3$perc_atabos <-
# tab3$perc_atabos %>% mutate(percAtabo_c = paste0(percAtabo, "%"))
# tab3$perc_bel <-
# tab3$perc_bel %>% mutate(percBel_c = paste0(percBel, "%"))
#
# blank_page <-
# map(gca_nm, gen_blank_page, information$data_ready$level_nm[[1]])
# perIn <- tab3$perc_ins %>% group_split(GCA)
# percAtabv <- tab3$perc_atabos %>% group_split(GCA)
# percBel <- tab3$perc_bel %>% group_split(GCA)
#
# min_data <- cut_data %>% select(ends_with("_p"))
#
# tab3$eff_page <-
# map(1:length(blank_page), summarize_page,
# blank_page, perIn, percAtabv, percBel, min_data, level_names, num_item,
# loc_num) %>%
# bind_rows(.)
# })
#
# ## Summary of Cut Scores and impact data Display #
# #------------------------------------------------------------
# observeEvent(input$update, {
# output$pagetb <-
# renderText({
# page_data <- tab3$eff_page %>% data.frame()
#
# forline <- page_data %>% pull(1) %>% unique() %>% length()
# kable.line <- 1:forline
# for(fl in 1:forline){
# kable.line[fl] <- 5*fl + 0
# }
#
# for_report$effpage <-
# page_data %>%
# kable(.,"html", escape = F, align = "c",
# table.attr = "style='width:50%;'") %>%
# kable_styling(bootstrap_options = c("striped"),
# # full_width = F,
# position = "left",
# font_size = 18,
# fixed_thead = T) %>%
# row_spec(1:nrow(page_data), color = "black") %>%
# row_spec(0, angle = 0,
# background = "floralwhite",
# extra_css = "border-bottom: 1px solid") %>%
# collapse_rows(columns = 1:2, valign = "top") %>%
# row_spec(., kable.line, extra_css = "border-bottom: 1px solid")
#
# for_report$effpage
#
# })
# })
#
# observeEvent(input$update,
# {
# output$pagePlot1 <- renderPlot({
#
# tab3$p_page1 <-
# tab3$scale_scores %>%
# ggplot() +
# geom_line(aes(x = GCA, y = scaleScore,
# colour = Level, group = Level),size = 2) +
# geom_text(aes(label = scaleScore,
# x = GCA, y = scaleScore, group = Level), size = 6,
# vjust = 1) +
# labs(title = "Scale Score Cut Scores",
# y = "Scale Score Cut Scores") +
# theme_bw(base_size = 20) +
# scale_color_brewer(palette="Paired")
#
# tab3$p_page1
# })
# output$pagePlot2 <- renderPlot({
#
# tab3$p_page2 <-
# tab3$perc_ins %>%
# mutate(Level = factor(Level),
# Level = factor(Level, levels = rev(levels(Level)))
# ) %>%
# ggplot() +
# geom_col(aes(x = GCA, y = percIn, fill = Level)) +
# geom_text(aes(label = percIn,
# x = GCA, y = percIn, group = Level),
# size = 6,
# position = position_stack(vjust = .5)) +
# labs(title = "Percentage in Level",
# y = "Percentage in Level") +
# theme_bw(base_size = 20) +
# scale_fill_brewer(palette="Paired")
#
# tab3$p_page2
# })
# output$pagePlot3 <- renderPlot({
#
# tab3$p_page3 <-
# tab3$perc_atabos %>%
# ggplot() +
# geom_line(
# aes(x = GCA, y = percAtabo, colour = Level, group = Level),
# size = 1.5) +
# geom_text(aes(label = percAtabo,
# x = GCA, y = percAtabo, group = Level), size = 6,
# vjust = 1) +
#
# labs(title = "Percentage At or Above Cut Score",
# y = "Percentage At or Above Cut Score") +
# theme_bw(base_size = 20) +
# scale_color_brewer(palette="Paired")
#
# tab3$p_page3
# })
# })
# #
# Item Review ---------------------------------------------------
#----------------------------------------------------------------
## Item Review Ready
#----------------------------------------------------------------
## Item Review Display
#----------------------------------------------------------------
observeEvent(input$run_tab1,
{
output$review <-
DT::renderDataTable({
for_report$ireview <- tab4_table_review(tab4)
for_report$ireview
})
})
# Item Review Update
#----------------------------------------------------------------
## Item Review Ready
#----------------------------------------------------------------
# observeEvent(input$update,
# {
# n.of.gca <- information$data_ready$id_list$GCA
# n.of.tb <- rep(1, length(n.of.gca))
#
# loc_nm <- information$base_data$loc_nm
#
# for_tab2_out <- tab2$for_tab2_out
#
# level_names <- names(tab3$eff_page)[-c(1:3)]
#
# SD <- information$data_ready$SD_data
#
# cs_inf <-
# tab1$modal_res_all %>%
# select(GCA, ends_with("_loc")) %>%
# set_names(., nm = c("GCA", level_names)) %>%
# gather(., "ALD", "Cut_Score", -GCA)
#
# item_review_table <-
# foreach(vi = 1:length(n.of.gca), .combine = 'rbind') %do% {
# # vi = 2
#
# cutpoint_inp <- tab1$modal_selected_cp_all[[vi]]
#
# dataUse_1 <- for_tab2_out[[vi]][[1]][["t_out"]]
#
# dataUse_Weight <-
# dataUse_1 %>%
# mutate(
# weightSum = dplyr::select(., ends_with("_W")) %>%
# rowSums()
# ) %>% pull(weightSum)
#
# target_names <- dataUse_1$ALD
#
# lv_name <- target_names %>% unique() %>% sort()
# #
# given_n <- c(1:length(lv_name))
# targets_n <- match(target_names, lv_name)
# ## dataUse_1["ALD"]
# er <- length(target_names)
# review_table <-
# foreach(n = 2:(length(given_n)), .combine = 'rbind') %do% {
# # n = 2
# cr <- cutpoint_inp[(n-1)]
# # cr = 3
# cr_abo <- cr
# cr_bel <- cr
#
# c_bel <- which(targets_n[0:(cr - 1)] >= n)
# c_abo <- (which(targets_n[cr_abo:er] < n) - 1) + cr_abo
#
# dataUse_1[c(c_bel, c_abo), ]
# }
# all_names <- names(review_table)
# review_table <- review_table %>% distinct(!!!syms(all_names))
# review_table <-
# review_table %>%
# select(-Round) %>%
# mutate(.,
# Weight = dplyr::select(., ends_with("_W")) %>%
# rowSums()
# )
# }
#
# cs_inf_upper <-
# cs_inf %>%
# mutate(
# ALD = extract_num(ALD),
# ALD = paste0("Level", (ALD - 1))
# ) %>%
# rename(
# "Cut_Score_upper" = "Cut_Score"
# )
#
# item_review_table <-
# item_review_table %>%
# left_join(., cs_inf, by = c("GCA" = "GCA",
# "ALD" = "ALD")) %>%
# left_join(., cs_inf_upper, by = c("GCA" = "GCA",
# "ALD" = "ALD")) %>%
# left_join(., SD, by = c("GCA" = "GCAid")) %>%
#
# mutate(AN = extract_num(ALD),
# ON = extract_num(Operational_Lv),
# Diff_LV = AN - ON,
# Distance = case_when(
# AN > ON ~ !!as.name(loc_nm) - Cut_Score,
# AN < ON ~ !!as.name(loc_nm) - (Cut_Score_upper - 1)
# ),
# `Std. Distance` = round(Distance / SD, 3)
# ) %>%
#
# select(-matches("L[[:digit:]]+"), -AN, -ON) %>%
# select(
# GCA, Item_ID, OOD,
# ALD, Operational_Lv, Diff_LV,
# starts_with("Loc"),
# Distance,`Std. Distance`) %>%
# rename(
# "Aligned_ALD" = "ALD"
# ) %>%
# arrange(
# GCA, Item_ID
# )
#
# tab4$for_tab4_out <- item_review_table
# })
#
# ## Item Review Display
# #----------------------------------------------------------------
# observeEvent(input$update,
# {
# output$review <-
# DT::renderDataTable({
#
# maxRow <- nrow(tab4$for_tab4_out)
# grades <- tab4$for_tab4_out %>% pull(1) %>% unique()
# colors <- c('#DAF7A6',"#A6B1F7","#A6F7C3","#A6DAF7","#FFC300")
#
# tab4_out <-
# tab4$for_tab4_out
#
# for_report$ireview <-
# DT::datatable(tab4_out,
# rownames = F,
# options = table_options_new_2(maxRow)
# ) %>%
# formatStyle(1,
# backgroundColor = styleEqual(grades,colors[1:length(grades)])
# )
#
# for_report$ireview
# })
# })
#
# Report
#------------------------------------------------------------------------
reportTables <- reactiveValues()
observeEvent(input$run_tab4,
{
setup_data <-
information$imported_data$setup_data %>%
set_names(nm = c("GCA","Content Area", "Grade","Table per Room","Level Options", "SD"))
setup_data <-
classAppend(setup_data, "inpdata")
reportTables$setup <- mytable(setup_data, "Table 1. Grades, Content Areas, Numbers and Names of Levels")
panel_data <-
classAppend(information$data_ready$id_list$PanelID, "inpdata")
reportTables$panel <- mytable(panel_data, "Table 2. Panelists and Configuration")
indi_table <- tab1$indi_table %>% rename("Cors" = "Correlation")
indi_table <- classAppend(indi_table, "ESSresult1")
reportTables$indi <-
mytable(indi_table, "Table 3. Inidividual ESS")
modal_table <- tab1$modal_table %>% rename("Cors" = "Correlation")
modal_table <- classAppend(modal_table, "ESSresult1")
reportTables$modal <- mytable(modal_table, "Table 4. Modal ESS")
median_table <- classAppend(tab1$median_table, "ESSresult2")
reportTables$med <- mytable(median_table, "Table 5. Median ESS")
for(i in 1:length(tab2$for_tab2_out)){
# i <- 1
f_tab_gen <- tab2$for_tab2_out[[i]][[1]][["t_out"]]
f_tab_gen <- classAppend(f_tab_gen, "detailESS")
f_tab_gen <- mytable(f_tab_gen, paste0("Table 6-",i,". Detailed ESS"))
reportTables[[paste0("detailESS_",i)]] <- f_tab_gen
}
for(i in 1:length(tab2$for_tab2_out)){
# i <- 1
crosstabs <- tab2$for_tab2_out[[i]][[1]][["crosst"]]
crosstabs <- classAppend(crosstabs, "crosst")
crosstabs <- mytable(crosstabs, paste0("Table 7-",i,". Crosstabs"))
reportTables[[paste0("crosst_",i)]] <- crosstabs
}
eff_page <- classAppend(tab3$eff_page, "effpage")
reportTables$effpage<-mytable(eff_page, "Table 8. Cut Page")
item_review <- classAppend(tab4$for_tab4_out, "review")
reportTables$ireview <- mytable(item_review, "Table 9. Item Review")
})
observe({
req(reportTables$ireview)
show_alert(
title = "Report Ready",
text = "Press Download",
type = "success"
)
})
output$report <- downloadHandler(
filename = function() {
paste("Report_",Sys.Date(), ".docx", sep = "")
},
content = function(file) {
shiny::withProgress(
message = paste0("Downloading", " the document"),
value = 0,
{
file_docx <- tempfile(fileext = ".docx")
for_tab2_out <- tab2$for_tab2_out
shiny::incProgress(1/10)
Sys.sleep(1)
shiny::incProgress(5/10)
word_out3(file_docx, reportTables = reportTables,
for_tab2_out = for_tab2_out, tab3 = tab3)
Sys.sleep(1)
shiny::incProgress(4/10)
Sys.sleep(1)
file.rename( from = file_docx, to = file )
}
)
}
)
# Validity Tab
#-------------------------------------------------------------------
val_data <-
reactive({
read_excel(input$val_data$datapath)
})
observeEvent(input$val_import,
{
SD_data <- information$data_ready$SD_data
val_data <- val_data()
cut_score <-
map(tab3$page_data, ~ .[["scale_scores"]]) %>%
bind_rows() %>%
left_join(., SD_data, by = c("GCA" = "GCAid"))
val_table <-
tibble(
GCA = val_data$GCA,
Level = cut_score$Level,
Existing_Cut_score = val_data$`Cut Score`,
ESS_Cut_score =cut_score$scaleScore,
Difference = Existing_Cut_score - ESS_Cut_score,
SD = cut_score$SD,
Std_Diff = round(Difference/SD,2)
)
output$valid <-
DT::renderDataTable({
DT::datatable(val_table)
})
})
})#shinySever
##############################################################
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