API for sqjin/scAI
integrative analysis of single-cell transcriptomic and epigenomic profiles

Global functions
DifferentialLRT Man page Source code
ExpMean Man page Source code
LogVMR Man page Source code
VscAIplot Man page Source code
addpData Man page Source code
as_matrix Man page Source code
assignSingletons Source code
bimodLikData Man page Source code
cellVisualization Man page Source code
clust2Mat Man page Source code
create_scAIobject Man page Source code
data_A549 Man page
data_kidney Man page
data_mESC Man page
data_simulation Man page
data_simulation8 Man page
eigenMapMatMult Source code
eigenMapMatcrossprod Source code
eigenMapMattcrossprod Source code
featureHeatmap Man page Source code
featureRankingPlot Man page Source code
featureScoreVisualization Man page Source code
featureVisualization Man page Source code
findNearbyLoci Man page Source code
getAggregatedData Man page Source code
getEmbeddings Man page Source code
identifyClusterMarkers Man page Source code
identifyClusters Man page Source code
identifyFactorMarkers Man page Source code
inferRegulations Man page Source code
lmHeatmap Man page Source code
preprocessing Man page Source code
reducedDims Man page Source code
reorderFeatures Man page Source code
runLeiden Man page Source code
runPCA Man page Source code
runUMAP Man page Source code
run_scAI Man page Source code
scAI Man page
scAI-class Man page
scAI_theme_opts Man page Source code
scAImodel Man page Source code
scPalette Man page Source code
searchGeneRegions Man page Source code
selectFeatures Man page Source code
selectK Man page Source code
show,scAI-method Man page
sqjin/scAI documentation built on Nov. 19, 2020, 4:04 p.m.