featureHeatmap: generate a heatmap for the expression of differential...

In sqjin/scAI: integrative analysis of single-cell transcriptomic and epigenomic profiles

Description

generate a heatmap for the expression of differential features across different cell groups

Usage

featureHeatmap(object, assay, feature.use, group.by, color.use = NULL,
  use.agg = TRUE, rescaling = TRUE, names.show = TRUE,
  size.names = 8)

Arguments

object	scAI object
assay	define an assay to show, e.g., assay = "RNA"
feature.use	a vector of features to show
group.by	the name of the variable in pData, defining cell groups. cells are grouped together
color.use	colors for the cell clusters
use.agg	whether use aggregated data
rescaling	whether rescale each feature across all the cells
names.show	whether show the feature names
size.names	the font size of the feature names

sqjin/scAI documentation built on Nov. 19, 2020, 4:04 p.m.