featureRankingPlot: Ranking the features (genes/loci) and show the top markers in...

In sqjin/scAI: integrative analysis of single-cell transcriptomic and epigenomic profiles

Description

Ranking the features (genes/loci) and show the top markers in each factor

Usage

featureRankingPlot(object, assay, factor.show = NULL, ncol = NULL,
  feature.show = NULL, feature.show.names = NULL, top.p = 0.5,
  features.diff = NULL, ylabel = "Weight")

Arguments

object	scAI object
assay	define an assay to show, e.g., assay = "RNA"
factor.show	a set of factors to show
ncol	number of columns in plot
feature.show	a vector of the features that are labeled on the plot
feature.show.names	instead of the default name in feature.show, one can show the manual feature name such as the enriched motif
top.p	showing the features in top ranking
features.diff	a table includes the differential features, returned from identifyfactorMakrers.R
ylabel	ylabel shown on the y-axis

sqjin/scAI documentation built on Nov. 19, 2020, 4:04 p.m.