selectFeatures: select highly variable features

In sqjin/scAI: integrative analysis of single-cell transcriptomic and epigenomic profiles

Description

select highly variable features

Usage

selectFeatures(object, assay = "RNA", do.plot = TRUE, do.text = TRUE,
  x.low.cutoff = 0.01, x.high.cutoff = 3.5, y.cutoff = 0.5,
  y.high.cutoff = Inf, num.bin = 20, pch.use = 16,
  col.use = "black", cex.text.use = 0.5)

Arguments

object	scAI objecy
assay	Name of assay
do.plot	Whether showing plot
do.text	Whether adding feature names
x.low.cutoff	The minimum expression level
x.high.cutoff	The maximum expression level
y.cutoff	The minimum fano factor values
y.high.cutoff	The maximum fano factor values
num.bin	Number of bins
pch.use	Shape of dots in ggplot
col.use	Color of dots
cex.text.use	Size of text

sqjin/scAI documentation built on Nov. 19, 2020, 4:04 p.m.