lmHeatmap: Visualize the inferred biologically relevant factors We plot...

In sqjin/scAI: integrative analysis of single-cell transcriptomic and epigenomic profiles

Description

Visualize the inferred biologically relevant factors We plot the heatmap of the three learned low-rank matrices using hierarchical clustering.

Usage

lmHeatmap(object, color.by, colors.use = NULL, do.sampling = T)

Arguments

object	scAI object
color.by	the name of the variable in object.pData; defining cell groups (not necessary)
colors.use	defined colors of the cell groups
do.sampling	whether perform sampling of loci when generating heatmap of the loci-factor matrix

sqjin/scAI documentation built on Nov. 19, 2020, 4:04 p.m.