Files in sqjin/scAI
integrative analysis of single-cell transcriptomic and epigenomic profiles
DESCRIPTION
LICENSE
NAMESPACE
R/RcppExports.R
R/data.R
R/scAI_model.R
R/scAI_plotting.R
README.md
data/data_A549.rda
data/data_kidney.RData
data/data_mESC.rda
data/data_simulation.rda
data/data_simulation8.rda
examples/walkthrough_A549dataset.Rmd
examples/walkthrough_A549dataset.html
examples/walkthrough_Kidneydataset.Rmd
examples/walkthrough_Kidneydataset.html
examples/walkthrough_mESC_dataset.Rmd
examples/walkthrough_mESC_dataset.html
examples/walkthrough_simulation.Rmd
examples/walkthrough_simulation.html
examples/walkthrough_simulation_dataset8.Rmd
examples/walkthrough_simulation_dataset8.html
hello.R
inst/scAImodel_py.py
man/DifferentialLRT.Rd
man/ExpMean.Rd
man/LogVMR.Rd
man/VscAIplot.Rd
man/addpData.Rd
man/as_matrix.Rd
man/bimodLikData.Rd
man/cellVisualization.Rd
man/clust2Mat.Rd
man/create_scAIobject.Rd
man/data_A549.Rd
man/data_kidney.Rd
man/data_mESC.Rd
man/data_simulation.Rd
man/data_simulation8.Rd
man/featureHeatmap.Rd
man/featureRankingPlot.Rd
man/featureScoreVisualization.Rd
man/featureVisualization.Rd
man/findNearbyLoci.Rd
man/getAggregatedData.Rd
man/getEmbeddings.Rd
man/identifyClusterMarkers.Rd
man/identifyClusters.Rd
man/identifyFactorMarkers.Rd
man/inferRegulations.Rd
man/lmHeatmap.Rd
man/preprocessing.Rd
man/reducedDims.Rd
man/reorderFeatures.Rd
man/runLeiden.Rd
man/runPCA.Rd
man/runUMAP.Rd
man/run_scAI.Rd
man/scAI-class.Rd
man/scAI_theme_opts.Rd
man/scAImodel.Rd
man/scPalette.Rd
man/searchGeneRegions.Rd
man/selectFeatures.Rd
man/selectK.Rd
man/show-scAI-method.Rd
overview_scAI.png
scAI.Rproj
scAI_1.0.0.tar.gz
src/RcppExports.cpp
src/RcppExports.o
src/scAI.so
src/scAI_Rcpp.cpp
src/scAI_Rcpp.o
