counts_to_cpm: Compute counts per million (CPM)
In ssarda/genomeutils: Utilities for Genome Analysis
Description
Usage
Arguments
Value
Description
Convert raw counts to counts per million (CPM) by dividing each column by its total then multiplying by 1,000,000.
Spike-ins should be excluded from the calculation of total expression in order to correct for total cell RNA content, therefore they should be specified to exclude them from downstream analysis
Usage
1
counts_to_cpm(expr_mat, spikes = NULL)
Arguments
expr_mat
Input matrix with expression values for genes in the form (Genes x Samples)
spikes
A vector of genes that were spike-ins in the original experiment
Value
A matrix with CPM expression values
ssarda/genomeutils documentation built on May 30, 2019, 8:42 a.m.
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Description Usage Arguments Value
Description
Convert raw counts to counts per million (CPM) by dividing each column by its total then multiplying by 1,000,000. Spike-ins should be excluded from the calculation of total expression in order to correct for total cell RNA content, therefore they should be specified to exclude them from downstream analysis
Usage
1 | counts_to_cpm(expr_mat, spikes = NULL)
|
Arguments
expr_mat |
Input matrix with expression values for genes in the form (Genes x Samples) |
spikes |
A vector of genes that were spike-ins in the original experiment |
Value
A matrix with CPM expression values
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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