fetch_gc_content: Fetch GC content from gene IDs
In ssarda/genomeutils: Utilities for Genome Analysis
Description
Usage
Arguments
Value
Description
A Genomic Ranges object is constructed from UCSC Genome Browser, identified by the Ensembl hg19 assembly gene IDs.
The function then retrieves the sequences of individual genes identified by the corrdinates of the gene IDs from BSgenome hg19 assembly.
The alphabet frequencies are computed, and then the G+C content is reported as a fraction. This is returned per gene ID
Usage
1
fetch_gc_content(select_genes)
Arguments
select_genes
A character vector with a given set of interesting genes
Value
A vector of gene GC contents
ssarda/genomeutils documentation built on May 30, 2019, 8:42 a.m.
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Description Usage Arguments Value
Description
A Genomic Ranges object is constructed from UCSC Genome Browser, identified by the Ensembl hg19 assembly gene IDs. The function then retrieves the sequences of individual genes identified by the corrdinates of the gene IDs from BSgenome hg19 assembly. The alphabet frequencies are computed, and then the G+C content is reported as a fraction. This is returned per gene ID
Usage
1 | fetch_gc_content(select_genes)
|
Arguments
select_genes |
A character vector with a given set of interesting genes |
Value
A vector of gene GC contents
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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